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| ID | Category | Engine | Name | Display | Version | Enabled | Object ID | Actions |
|---|---|---|---|---|---|---|---|---|
| 32 | spatial | nextflow | spaceranger_visium_count_nextflow | 10x Visium Space Ranger Count | 4.0.1 | ● Enabled | d1794ca5-2d12-4789-aff7-60d36cca61ee | |
| 41 | spatial | nextflow | spaceranger_visium_count_nextflow_v1 | 10x Visium Space Ranger Count (Nextflow) v1 | 4.0.1 | ● Enabled | cf7f6638-70b8-412b-bf9f-1457310937df | |
| 128 | microbiome | nextflow | amplicon_16s | 16S Amplicon | 1.0.0 | ● Enabled | e2ac68dc-1187-4b34-8d7b-5de18b6fd192 | |
| 588 | multimodal | nextflow | mesh_generation | 3D Mesh Generation and Processing | 1.0.0 | ● Enabled | d020d5f9-5cc6-4123-af0d-c4c9218babf2 | |
| 389 | microbiome | nextflow | abundance_estimation | Abundance Estimation | 1.0.0 | ● Enabled | 1af69ceb-8a31-4a6b-9638-480d343a901b | |
| 437 | clinical | nextflow | adapter_trimming | Adapter Trimming | 1.0.0 | ● Enabled | ec89019b-f24d-4c2f-8b22-efb7ee20d898 | |
| 211 | clinical | nextflow | adaptive_designs | Adaptive Designs | 1.0.0 | ● Enabled | b57d7704-3b86-4bd0-9e21-97bacfdb199f | |
| 52 | clinical | nextflow | admet_prediction_v1 | ADMET Property Prediction Pipeline | 1.0.0 | ● Enabled | 8493c102-9188-45df-b50d-92f29012c4ab | |
| 223 | epigenomics | nextflow | ago_clip_mirna_targets | Ago Clip MIRNA Targets | 1.0.0 | ● Enabled | 70c93b29-bd7e-470a-9211-73a0ba1dbe04 | |
| 451 | rnaseq | nextflow | alignment_free_quant | Alignment Free Quant | 1.0.0 | ● Enabled | df78515c-bed3-465a-88db-0e40cdf9fd3f | |
| 199 | epigenomics | nextflow | allele_specific_binding | Allele Specific Binding | 1.0.0 | ● Enabled | f17a05fe-e04e-4ee6-bc0f-259ee931b6a5 | |
| 479 | multimodal | nextflow | alphafold_predictions | Alphafold Predictions | 1.0.0 | ● Enabled | 7e0f4212-7b19-4bd8-ac98-454e59cc783b | |
| 543 | proteomics | nextflow | alphafold_structure | AlphaFold Structure Prediction | 1.0.0 | ● Enabled | 35b79c9c-f46a-4483-b1a0-63b31a30a913 | |
| 141 | multimodal | nextflow | alphafold2 | AlphaFold2 Structure Prediction | 1.0.0 | ● Enabled | 50f3a3d1-9f05-4dc4-8287-eb994f1c2d42 | |
| 525 | proteomics | nextflow | alphafold2_structure_prediction | Alphafold2 Structure Prediction | 1.0.0 | ● Enabled | ff3d6a12-3016-478d-8dcd-bd670df6bc20 | |
| 395 | microbiome | nextflow | amplicon_processing | Amplicon Processing | 1.0.0 | ● Enabled | 6b705d13-1590-4e30-acad-64bcd1542696 | |
| 169 | microbiome | nextflow | amr_detection | AMR Gene Detection | 1.0.0 | ● Enabled | bc833b8f-5484-492a-be50-a9eb44726cb6 | |
| 554 | microbiome | nextflow | amr_surveillance | AMR Genomic Surveillance | 1.0.0 | ● Enabled | 107e9b42-5e0d-4181-9e76-55eaed946f36 | |
| 235 | funcgen | nextflow | ancestral_reconstruction | Ancestral Reconstruction | 1.0.0 | ● Enabled | 3c21556e-8769-4224-b175-da9c5dc108a9 | |
| 65 | longread | nextflow | ancient_dna_v1 | Ancient DNA Analysis | 1.0.0 | ● Enabled | c9805edf-b39a-4956-ac1f-a249fb2a17ec | |
| 514 | singlecell | nextflow | anndata_sc_io | Anndata SC Io | 1.0.0 | ● Enabled | ccdf70ee-4852-49a8-990f-e6905904493f | |
| 544 | singlecell | nextflow | anndata_io | AnnData Single-cell I/O | 1.0.0 | ● Enabled | 63353286-61b8-4c8c-9093-f4424687543a | |
| 513 | singlecell | nextflow | archr_scatac | Archr Scatac | 1.0.0 | ● Enabled | aa32f1ce-2054-4658-ba54-2a89728259bd | |
| 321 | longread | nextflow | assembly_polishing | Assembly Polishing | 1.0.0 | ● Enabled | 08f54792-25b8-4a78-8f3e-981a06ebf530 | |
| 322 | longread | nextflow | assembly_qc | Assembly QC | 1.0.0 | ● Enabled | b702009a-9292-410a-824d-7839792706d5 | |
| 415 | funcgen | nextflow | association_testing | Association Testing | 1.0.0 | ● Enabled | 02def6d1-9e17-4f48-961c-d151825c22bd | |
| 38 | epigenomics | nextflow | atacseq_nextflow_v1 | ATAC-seq (Nextflow) v1 | 1.0.0 | ● Enabled | 5c69ae8a-5cb0-4e02-adc4-8c0135cff275 | |
| 375 | multimodal | nextflow | atlas_mapping | Atlas Mapping | 1.0.0 | ● Enabled | b3ef06b1-e76c-4249-970e-9927ca0035cb | |
| 330 | funcgen | nextflow | base_editing_design | Base Editing Design | 1.0.0 | ● Enabled | a0882507-752b-42a8-a75d-be3c5eadf389 | |
| 368 | longread | nextflow | basecalling | Basecalling | 1.0.0 | ● Enabled | 37133808-7cdf-418e-8f7a-9cbcfe57ee8c | |
| 458 | clinical | nextflow | batch_processing | Batch Processing | 1.0.0 | ● Enabled | 0f3be0c8-ea1e-41d6-aa35-ee87994ec4dd | |
| 212 | clinical | nextflow | bayesian_trials | Bayesian Trials | 1.0.0 | ● Enabled | 9d03aa03-ac1a-4c27-b970-83c65fa4489c | |
| 335 | funcgen | nextflow | bed_file_basics | BED File Basics | 1.0.0 | ● Enabled | bc33e119-f3e4-4c02-a12b-f09f9d4abbbf | |
| 336 | funcgen | nextflow | bedgraph_handling | Bedgraph Handling | 1.0.0 | ● Enabled | 98ac25bd-ae9e-4a63-aa64-4119f046731e | |
| 337 | funcgen | nextflow | bigwig_tracks | Bigwig Tracks | 1.0.0 | ● Enabled | f2ff1eaa-eff9-4ee4-ae0a-f1f8c995b396 | |
| 545 | proteomics | nextflow | bindcraft_design | BindCraft Protein Binder Design | 1.0.0 | ● Enabled | 9087f28b-650d-4ce4-a116-1dbc13cc1cc8 | |
| 224 | epigenomics | nextflow | binding_site_annotation | Binding Site Annotation | 1.0.0 | ● Enabled | 7d6512bf-f3cb-4f97-8f0c-9a0ff0b72a86 | |
| 81 | multimodal | nextflow | foundation_model_v1 | Biological Foundation Model | 1.0.0 | ● Enabled | 40ed83f1-91bc-4fe0-8c13-f32f4ea33dcf | |
| 376 | multimodal | nextflow | biomarker_discovery | Biomarker Discovery | 1.0.0 | ● Enabled | a5dd5736-f938-4132-b0b5-1e21597e5afe | |
| 607 | multimodal | nextflow | bio_nlp_transformers | Biomedical NLP with Transformers | 1.0.0 | ● Enabled | 35e784d7-a369-485c-a0d5-b68c73b76e6e | |
| 157 | epigenomics | nextflow | bismark_alignment | Bisulfite Alignment with Bismark | 1.0.0 | ● Enabled | ad013199-4e5d-4fb0-a2d7-00dfa545d280 | |
| 548 | proteomics | nextflow | boltz_generative | Boltz Generative Structure Sampling | 1.0.0 | ● Enabled | 0d6328c6-c8d3-4684-ac1c-f28b8925d91f | |
| 526 | proteomics | nextflow | boltz_structure_prediction | Boltz Structure Prediction | 1.0.0 | ● Enabled | defcd438-e336-40b5-a60b-7bcf9db91ad0 | |
| 547 | proteomics | nextflow | boltz_structure | Boltz Structure Prediction | 1.0.0 | ● Enabled | eb701db3-4a2f-4265-87ee-8133aff279b6 | |
| 433 | clinical | nextflow | bowtie2_alignment | Bowtie2 Alignment | 1.0.0 | ● Enabled | e116ad6c-e9ed-4c4e-9f14-b8a07463aa31 | |
| 159 | rnaseq | nextflow | bulk_rnaseq_deseq2 | Bulk RNA-seq DESeq2 Differential Expression | 1.0.0 | ● Enabled | 5e0d1560-bd74-4614-a5b7-e3c448e2668a | |
| 434 | clinical | nextflow | bwa_alignment | Bwa Alignment | 1.0.0 | ● Enabled | 1144b0d7-ec91-4a74-a9d6-57cc6476bf91 | |
| 213 | clinical | nextflow | categorical_tests | Categorical Tests | 1.0.0 | ● Enabled | b25fd0aa-27cc-43de-9465-04d8fe17df50 | |
| 214 | clinical | nextflow | cdisc_data_handling | Cdisc Data Handling | 1.0.0 | ● Enabled | d3631778-07cc-41f0-9841-b158762e063c | |
| 116 | singlecell | nextflow | cell_communication | Cell Communication | 1.0.0 | ● Enabled | 1f662f9b-a528-48c5-887a-2a067eb8d36f | |
| 351 | clinical | nextflow | cell_segmentation | Cell Segmentation | 1.0.0 | ● Enabled | ec0d1da9-822c-45f3-8368-892bae1ea7a8 | |
| 512 | singlecell | nextflow | cellbender_ambient_rna | Cellbender Ambient RNA | 1.0.0 | ● Enabled | fc702f88-c2af-473c-b520-b9805a66f397 | |
| 549 | singlecell | nextflow | cellbender_ambient | CellBender Ambient RNA Removal | 1.0.0 | ● Enabled | beadf5e7-5cae-40b6-972e-e2a72e5b49f2 | |
| 611 | singlecell | nextflow | cellphonedb_interactions | CellPhoneDB Cell-Cell Interactions | 1.0.0 | ● Enabled | d83ee251-34c2-489d-9577-64087411fc51 | |
| 537 | singlecell | nextflow | cellphonedb_communication | Cellphonedb Communication | 1.0.0 | ● Enabled | 54a62420-6237-4fc7-9f61-ee6f8fb27c9f | |
| 150 | clinical | nextflow | cfdna_fragment | cfDNA Fragment Analysis | 1.0.0 | ● Enabled | 546d7ef5-89aa-4710-a263-949d6eba4fda | |
| 643 | fragmentomics | nextflow | fragmentomics | cfDNA Fragmentomics (lpWGS) | 1.0.0 | ● Enabled | 1222d041-8205-4863-9c62-e44916f41550 | |
| 102 | clinical | nextflow | cfdna_liquid_biopsy | cfDNA Liquid Biopsy | 1.0.0 | ● Enabled | 559adf64-49f1-4c42-b228-740703908c8f | |
| 362 | clinical | nextflow | cfdna_preprocessing | Cfdna Preprocessing | 1.0.0 | ● Enabled | e28281f3-6e5a-4eee-8726-534ade99aa93 | |
| 550 | proteomics | nextflow | chai_structure | Chai-1 Structure Prediction | 1.0.0 | ● Enabled | e323882f-16b2-4518-994d-07fbe2222b0c | |
| 125 | funcgen | nextflow | chia_pet | ChIA-PET | 1.0.0 | ● Enabled | f5858873-e785-4c60-8e2f-724e1819fe1a | |
| 200 | epigenomics | nextflow | chip_deep_learning | CHIP Deep Learning | 1.0.0 | ● Enabled | 96811359-9394-46bf-a7bd-bc9621cdfacc | |
| 14 | epigenomics | wdl | chipseq_wdl_v1 | ChIP-seq (WDL) — SE/PE Trim+BWA+Dedup+MACS2+BigWig+HOMER | 1.0.0 | ● Enabled | f687c4a1-6844-4c9d-af45-ae7d1f8811c3 | |
| 154 | epigenomics | nextflow | chipseq_motif | ChIP-seq Motif Analysis | 1.0.0 | ● Enabled | 9acaa0ad-d20b-4312-8385-d94bdc55a388 | |
| 631 | epigenomics | nextflow | chipseq_motif_homer | ChIP-seq Motif Analysis with HOMER | 1.0.0 | ● Enabled | 8df3bae3-d91d-4b8c-924c-fc0ad2d247b5 | |
| 152 | epigenomics | nextflow | chipseq_peak_annotation | ChIP-seq Peak Annotation | 1.0.0 | ● Enabled | e6c8d3c7-6afe-4cec-a130-bb995512cb58 | |
| 632 | epigenomics | nextflow | chipseq_peak_annotation_chipseeker | ChIP-seq Peak Annotation | 1.0.0 | ● Enabled | 081f2c4a-19c3-4e67-8b5b-d7bc33106187 | |
| 151 | epigenomics | nextflow | chipseq_peak_calling | ChIP-seq Peak Calling | 1.0.0 | ● Enabled | a34e0e27-6f14-480c-8dd0-c2c9e6b98d35 | |
| 629 | epigenomics | nextflow | chipseq_qc_deeptools | ChIP-seq QC with deepTools | 1.0.0 | ● Enabled | 976365d6-6d99-47e6-a5e2-afa6917dbc21 | |
| 630 | epigenomics | nextflow | chipseq_visualization_deeptools | ChIP-seq Visualization | 1.0.0 | ● Enabled | 42ffd874-c18d-47fa-8c45-2695b61b3e38 | |
| 201 | epigenomics | nextflow | chipseq_qc | Chipseq QC | 1.0.0 | ● Enabled | e9b33ccc-e2ef-4645-9c54-5379ae328cf5 | |
| 202 | epigenomics | nextflow | chipseq_visualization | Chipseq Visualization | 1.0.0 | ● Enabled | 3d4ef001-46b7-4bc9-9bcb-961d376970a0 | |
| 156 | epigenomics | nextflow | chromatin_state | Chromatin State Segmentation | 1.0.0 | ● Enabled | 2ebd68db-2d40-4157-9f2f-249289e1df2d | |
| 203 | epigenomics | nextflow | chromatin_state_segmentation | Chromatin State Segmentation | 1.0.0 | ● Enabled | 0683da6c-8878-4e1f-9021-85c662529f38 | |
| 495 | multimodal | nextflow | circadian_rhythms | Circadian Rhythms | 1.0.0 | ● Enabled | 8a70a638-a383-453f-8822-25448ab250dd | |
| 94 | rnaseq | wdl | circrna_circtools_wdl_v1 | circRNA Detection (WDL) — PE STAR + mate1/mate2 | 1.0.5 | ● Enabled | abee28d2-976d-4243-b5cd-bb960e7806c5 | |
| 143 | multimodal | nextflow | multimodal_cite_atac | CITE-seq + scATAC Integration | 1.0.0 | ● Enabled | 15e702be-830f-4364-be67-d24d54d78971 | |
| 59 | singlecell | nextflow | cite_seq_v1 | CITE-seq RNA and Protein Analysis Pipeline | 1.0.0 | ● Enabled | ca5367f5-221d-408d-804f-4bff7dd46291 | |
| 172 | longread | nextflow | clair3_variants | Clair3 Long-read Variant Calling | 1.0.0 | ● Enabled | 3721662f-762c-4366-9a1e-d4b4c383362f | |
| 531 | microbiome | nextflow | claw_metagenomics | Claw Metagenomics | 1.0.0 | ● Enabled | b640ab2f-1e54-4ed7-b73b-9d69e9cadaf9 | |
| 71 | clinical | nextflow | exome_clinical_v1 | Clinical Exome Sequencing | 1.0.0 | ● Enabled | bdec58cf-4ecf-4740-9433-fa5652bd7c18 | |
| 500 | clinical | nextflow | clinical_interpretation | Clinical Interpretation | 1.0.0 | ● Enabled | dad016a8-82de-4d52-a671-5cc41e27f523 | |
| 53 | clinical | nextflow | clinical_trial_matching_v1 | Clinical Trial Matching Pipeline | 1.0.0 | ● Enabled | 6aaf24ba-b67d-4ed5-9e71-211eaa344437 | |
| 644 | clinical_reporting | nextflow | clinical_reporting | Clinical Variant Reporting (ACMG/AMP 2015) | 1.0.0 | ● Enabled | 927f8dcc-7e53-47d6-a6be-40576be1a3d5 | |
| 225 | epigenomics | nextflow | clip_alignment | Clip Alignment | 1.0.0 | ● Enabled | 235ab412-5dcd-40fc-a17b-ee4d53d737d9 | |
| 226 | epigenomics | nextflow | clip_deep_learning | Clip Deep Learning | 1.0.0 | ● Enabled | d9bea484-7b90-4ae7-a200-4f8e5484b00c | |
| 227 | epigenomics | nextflow | clip_motif_analysis | Clip Motif Analysis | 1.0.0 | ● Enabled | bb4ad479-da22-4132-8dbe-e15dc0835709 | |
| 228 | epigenomics | nextflow | clip_peak_calling | Clip Peak Calling | 1.0.0 | ● Enabled | f47a4971-7ba0-4a53-a1f0-5b6db8c54fb3 | |
| 229 | epigenomics | nextflow | clip_preprocessing | Clip Preprocessing | 1.0.0 | ● Enabled | 261b9b7e-546f-431f-b63c-8ab9d557454d | |
| 230 | epigenomics | nextflow | clip_qc | Clip QC | 1.0.0 | ● Enabled | 636d7c6c-7916-47da-a911-0702f730ff9a | |
| 96 | clinical | nextflow | cnv_analysis | CNV Analysis | 1.0.0 | ● Enabled | 194161cd-0a5a-4324-bc90-b707d693fb14 | |
| 148 | clinical | nextflow | cnvkit_analysis | CNVkit Copy Number Analysis | 1.0.0 | ● Enabled | c766dbbd-5978-45ba-bfbc-1a3e50a38f56 | |
| 467 | clinical | nextflow | codon_usage | Codon Usage | 1.0.0 | ● Enabled | c2a9fba6-0db7-4319-b5e7-46682093407a | |
| 190 | funcgen | nextflow | colocalization_analysis | Colocalization Analysis | 1.0.0 | ● Enabled | 95225af3-eeed-4b18-a499-7a8373024ff1 | |
| 635 | clinical | nextflow | coloc_colocalization | Colocalization Analysis | 1.0.0 | ● Enabled | 1ce3a729-781a-42d6-b767-678010f93f73 | |
| 236 | funcgen | nextflow | comparative_annotation_projection | Comparative Annotation Projection | 1.0.0 | ● Enabled | 29864299-64f2-4b07-9850-28e466d6a0ad | |
| 343 | funcgen | nextflow | compartment_analysis | Compartment Analysis | 1.0.0 | ● Enabled | f592e15c-b66c-45b2-80d4-884c44f6ae1b | |
| 459 | clinical | nextflow | compressed_files | Compressed Files | 1.0.0 | ● Enabled | a992b0c1-c805-49bd-9b49-d89f7fbf55ab | |
| 501 | clinical | nextflow | consensus_sequences | Consensus Sequences | 1.0.0 | ● Enabled | c7041d91-d904-4539-9b00-2222bf618011 | |
| 553 | funcgen | nextflow | conservation_genetics | Conservation Genetics Analysis | 1.0.0 | ● Enabled | e5076506-84bb-4ae6-9da3-82de7d5671bf | |
| 344 | funcgen | nextflow | contact_pairs | Contact Pairs | 1.0.0 | ● Enabled | 7a17b7c9-7a4e-4123-8492-6a2ce4580b22 | |
| 323 | longread | nextflow | contamination_detection | Contamination Detection | 1.0.0 | ● Enabled | 22079c35-fc4b-4a55-836c-055b1597847b | |
| 438 | clinical | nextflow | contamination_screening | Contamination Screening | 1.0.0 | ● Enabled | 5bf5ce55-f5fd-470d-949c-05972a5f1abb | |
| 485 | multimodal | nextflow | context_specific_models | Context Specific Models | 1.0.0 | ● Enabled | d9f9d8bf-3838-4c68-acfb-efe138dfa113 | |
| 248 | clinical | nextflow | copy_number_allele_specific_copy_number | Copy Number Allele Specific Copy Number | 1.0.0 | ● Enabled | 6cc7585b-4fe8-4683-8501-fc44497a11e4 | |
| 249 | clinical | nextflow | copy_number_cnv_annotation | Copy Number CNV Annotation | 1.0.0 | ● Enabled | 4321e803-91f2-47d9-8b56-241342e1c7c2 | |
| 250 | clinical | nextflow | copy_number_cnv_visualization | Copy Number CNV Visualization | 1.0.0 | ● Enabled | cad3722b-dc62-45f6-aeb7-53b424257b2d | |
| 251 | clinical | nextflow | copy_number_cnvkit_analysis | Copy Number Cnvkit Analysis | 1.0.0 | ● Enabled | 985568d0-2952-4a26-9664-2ea55d43af9d | |
| 252 | clinical | nextflow | copy_number_copy_ratio_segmentation | Copy Number Copy Ratio Segmentation | 1.0.0 | ● Enabled | 3d1903ac-8104-45cb-b3cf-744b6ff43f63 | |
| 253 | clinical | nextflow | copy_number_focal_amplification_ecdna | Copy Number Focal Amplification Ecdna | 1.0.0 | ● Enabled | c909b379-40d3-4f38-b2ee-f519f8a1031b | |
| 254 | clinical | nextflow | copy_number_gatk_cnv | Copy Number Gatk CNV | 1.0.0 | ● Enabled | e3089929-3911-4cc1-934d-c9242fac9e53 | |
| 255 | clinical | nextflow | copy_number_germline_cnv_interpretation | Copy Number Germline CNV Interpretation | 1.0.0 | ● Enabled | 6d591356-9a84-481c-8371-b7429c4dd50b | |
| 256 | clinical | nextflow | copy_number_hrd_scoring | Copy Number Hrd Scoring | 1.0.0 | ● Enabled | d6d17be8-a766-4147-9977-0128a2713886 | |
| 257 | clinical | nextflow | copy_number_recurrent_cnv | Copy Number Recurrent CNV | 1.0.0 | ● Enabled | 58748330-b8a0-48ae-ad1b-b80c952c067c | |
| 258 | clinical | nextflow | copy_number_subclonal_copy_number | Copy Number Subclonal Copy Number | 1.0.0 | ● Enabled | 742f0b47-8cdd-4559-90a2-ff1c59b2e6bb | |
| 452 | rnaseq | nextflow | count_matrix_qc | Count Matrix QC | 1.0.0 | ● Enabled | 7e473ee8-0f3e-48ed-8cd1-5e59e4c4464f | |
| 338 | funcgen | nextflow | coverage_analysis | Coverage Analysis | 1.0.0 | ● Enabled | a30b2a6a-8cf3-4a25-9343-353c593d3e2d | |
| 551 | funcgen | nextflow | crispr_guide_design | CRISPR Guide RNA Design | 1.0.0 | ● Enabled | 1e0c7224-fa55-4b30-a9a6-9064ba092935 | |
| 46 | funcgen | nextflow | crispr_ml_v1 | CRISPR Guide RNA ML Prediction Pipeline | 1.0.0 | ● Enabled | 179b1d5e-8ce5-4f47-94bb-44ef1eea4717 | |
| 552 | funcgen | nextflow | crispr_offtarget | CRISPR Off-target Prediction | 1.0.0 | ● Enabled | fda990ed-43e2-482b-b814-a3e9bf977962 | |
| 123 | funcgen | nextflow | crispr_screen_mageck | CRISPR Screen (MAGeCK) | 1.0.0 | ● Enabled | 5b5d0711-a684-4410-8005-ca0d492744b5 | |
| 259 | funcgen | nextflow | crispr_screens_bagel_essentiality | CRISPR Screens Bagel Essentiality | 1.0.0 | ● Enabled | af538c1d-9952-45d8-af0e-358abbdc81e8 | |
| 260 | funcgen | nextflow | crispr_screens_base_editing_analysis | CRISPR Screens Base Editing Analysis | 1.0.0 | ● Enabled | 23eb08ee-963f-4339-8d79-2d486e81bd08 | |
| 261 | funcgen | nextflow | crispr_screens_batch_correction | CRISPR Screens Batch Correction | 1.0.0 | ● Enabled | 633b6e16-e4b6-4fe8-a53a-9bf6480915f3 | |
| 262 | funcgen | nextflow | crispr_screens_combinatorial_screens | CRISPR Screens Combinatorial Screens | 1.0.0 | ● Enabled | 41039774-a005-4703-bde0-c035ea473dfa | |
| 263 | funcgen | nextflow | crispr_screens_copy_number_correction | CRISPR Screens Copy Number Correction | 1.0.0 | ● Enabled | 990b52a5-b13a-48e6-807f-d81f51563fcf | |
| 264 | funcgen | nextflow | crispr_screens_crispresso_editing | CRISPR Screens Crispresso Editing | 1.0.0 | ● Enabled | c187c886-44cc-486d-9f5f-96f94c3433c1 | |
| 265 | funcgen | nextflow | crispr_screens_drugz_chemogenomic | CRISPR Screens Drugz Chemogenomic | 1.0.0 | ● Enabled | 8fbafaac-e061-4b12-9061-fd87b7f46fa8 | |
| 266 | funcgen | nextflow | crispr_screens_hit_calling | CRISPR Screens Hit Calling | 1.0.0 | ● Enabled | 241cfd2b-604e-4812-92fb-ebbe5c6f70b0 | |
| 267 | funcgen | nextflow | crispr_screens_in_vivo_screens | CRISPR Screens In Vivo Screens | 1.0.0 | ● Enabled | e8710d32-9c73-434f-9fed-d9aeca74e071 | |
| 268 | funcgen | nextflow | crispr_screens_jacks_analysis | CRISPR Screens Jacks Analysis | 1.0.0 | ● Enabled | 06352761-09f6-4f95-a3f4-978473522760 | |
| 269 | funcgen | nextflow | crispr_screens_library_design | CRISPR Screens Library Design | 1.0.0 | ● Enabled | aee2c1f0-5395-4a85-90b7-a617fe87245e | |
| 270 | funcgen | nextflow | crispr_screens_mageck_analysis | CRISPR Screens Mageck Analysis | 1.0.0 | ● Enabled | 8c9f154c-8d73-41ea-83fc-03c334cb85e9 | |
| 271 | funcgen | nextflow | crispr_screens_perturb_seq_analysis | CRISPR Screens Perturb Seq Analysis | 1.0.0 | ● Enabled | ccdaba89-7eac-4732-bcdc-4acb06cd4bd7 | |
| 272 | funcgen | nextflow | crispr_screens_prime_editing_screens | CRISPR Screens Prime Editing Screens | 1.0.0 | ● Enabled | 4d3760a1-1681-49cf-8e3e-56ada84ef74a | |
| 273 | funcgen | nextflow | crispr_screens_screen_qc | CRISPR Screens Screen QC | 1.0.0 | ● Enabled | e7de6343-971d-4ea0-8c08-1ab89dc394c4 | |
| 134 | proteomics | nextflow | xlms | Cross-linking MS | 1.0.0 | ● Enabled | a68a21e0-a6a1-4904-9934-e042cacd23af | |
| 231 | epigenomics | nextflow | crosslink_site_detection | Crosslink Site Detection | 1.0.0 | ● Enabled | d5f47736-f390-4923-bdfa-b16331b70cd5 | |
| 68 | clinical | nextflow | ctdna_analysis_v1 | ctDNA Liquid Biopsy | 1.0.0 | ● Enabled | 3afdad8f-176b-41a2-bb3a-04352865165e | |
| 149 | clinical | nextflow | ctdna_mutation | ctDNA Mutation Detection | 1.0.0 | ● Enabled | ab35a501-47bb-413c-a6c1-12693a9ee8a9 | |
| 363 | clinical | nextflow | ctdna_mutation_detection | Ctdna Mutation Detection | 1.0.0 | ● Enabled | bdfcd297-e99c-4936-b702-f1364f3c9981 | |
| 204 | epigenomics | nextflow | cut_and_run_tag | Cut And Run Tag | 1.0.0 | ● Enabled | d2fde219-8bcc-49bc-9511-067915de29ac | |
| 155 | epigenomics | nextflow | cut_and_run | CUT&RUN / CUT&Tag Analysis | 1.0.0 | ● Enabled | cf025478-fc99-47f7-8a37-7c04891acbbf | |
| 634 | epigenomics | nextflow | cutnrun_seacr_peaks | CUT&RUN/CUT&TAG Peak Calling | 1.0.0 | ● Enabled | 6593d7ea-4ffa-4fcc-9108-08d7ebc29c43 | |
| 104 | epigenomics | nextflow | cut_and_tag | CUT&TAG Profiling | 1.0.0 | ● Enabled | 4fdaa8c5-785c-4aa4-8cfb-afce39d7b3c7 | |
| 401 | multimodal | nextflow | data_harmonization | Data Harmonization | 1.0.0 | ● Enabled | a84b191b-1b29-4d3c-8d43-8df59f8c421c | |
| 424 | proteomics | nextflow | data_import | Data Import | 1.0.0 | ● Enabled | 15103730-5348-4b4e-848c-5263a2307e65 | |
| 352 | clinical | nextflow | data_preprocessing | Data Preprocessing | 1.0.0 | ● Enabled | c499506d-34dd-42bd-bc4c-df6fc9368879 | |
| 57 | longread | nextflow | genome_assembly_v1 | De Novo Genome Assembly Pipeline | 1.0.0 | ● Enabled | 4f22eef4-8560-4a87-94d2-52ba10b7f362 | |
| 140 | multimodal | nextflow | deep_variant_calling | Deep Variant Calling | 1.0.0 | ● Enabled | e7946d8c-fe40-48ff-bacb-05a64cb7866b | |
| 502 | clinical | nextflow | deepvariant | Deepvariant | 1.0.0 | ● Enabled | 43e70d9d-3dc0-4e9c-bb8e-02410e434603 | |
| 599 | multimodal | nextflow | degenerate_filtering | Degenerate Input Filtering | 1.0.0 | ● Enabled | 9b10150c-abaa-48fb-8f65-2a6b32efe7a1 | |
| 425 | proteomics | nextflow | dia_analysis | DIA Analysis | 1.0.0 | ● Enabled | dc5ce913-7109-42a6-b3fe-5b3f9a7e3401 | |
| 132 | proteomics | nextflow | dia_proteomics | DIA Proteomics | 1.0.0 | ● Enabled | 9deabc55-77b1-4757-837b-36eba4e5f1f2 | |
| 586 | multimodal | nextflow | pydicom_imaging_v2 | DICOM Medical Imaging Processing | 1.0.0 | ● Enabled | a7af4319-bf0f-41d1-a670-03062161c5ed | |
| 396 | microbiome | nextflow | differential_abundance | Differential Abundance | 1.0.0 | ● Enabled | 288a0955-f9b2-4dd5-99fb-0e332fe6fce7 | |
| 426 | proteomics | nextflow | differential_abundance | Differential Abundance | 1.0.0 | ● Enabled | 2d0d2352-6625-4742-a399-e4ace445c7a3 | |
| 353 | clinical | nextflow | differential_analysis | Differential Analysis | 1.0.0 | ● Enabled | beaa0d1a-8d3b-42b0-ab47-0c640514947a | |
| 205 | epigenomics | nextflow | differential_binding | Differential Binding | 1.0.0 | ● Enabled | 1dd6d4de-9d3b-416a-a72f-5c6128fd67a4 | |
| 153 | epigenomics | nextflow | chipseq_differential | Differential ChIP-seq Binding | 1.0.0 | ● Enabled | 53d21a4b-2c3b-405e-af31-4fc732efb1b8 | |
| 232 | epigenomics | nextflow | differential_clip | Differential Clip | 1.0.0 | ● Enabled | 29903af8-a2a9-4384-bb84-866c07f4928e | |
| 392 | epigenomics | nextflow | differential_cpg_testing | Differential Cpg Testing | 1.0.0 | ● Enabled | 2b2642a0-691f-443a-bf2d-b528420431b3 | |
| 558 | funcgen | nextflow | differential_grn | Differential Gene Regulatory Networks | 1.0.0 | ● Enabled | 2bc5f96f-dab2-41e0-985e-0615885efc95 | |
| 566 | funcgen | nextflow | hic_differential_v2 | Differential Hi-C Analysis | 1.0.0 | ● Enabled | 11a3a9ef-4fbf-49c4-a321-3e4bbd983725 | |
| 474 | rnaseq | nextflow | differential_mirna | Differential MIRNA | 1.0.0 | ● Enabled | b83efa33-1891-48d8-8456-7962b50fe464 | |
| 161 | rnaseq | nextflow | differential_splicing | Differential Splicing with rMATS | 1.0.0 | ● Enabled | 97ddfdb5-2f5e-4bd2-8890-bb067c8381f1 | |
| 397 | microbiome | nextflow | diversity_analysis | Diversity Analysis | 1.0.0 | ● Enabled | 340b54d1-bf25-4a70-9dba-4229c08063f8 | |
| 158 | epigenomics | nextflow | dmr_detection | DMR Detection with methylKit | 1.0.0 | ● Enabled | ffd79681-e1c3-4265-a84b-95835beefe4e | |
| 44 | epigenomics | nextflow | methylation_bismark_pipeline | DNA Methylation (Bisulfite-seq) Pipeline | 1.0.0 | ● Enabled | ce461787-d9c7-4219-8ca8-d3a95730cdc8 | |
| 72 | clinical | nextflow | drug_synergy_v1 | Drug Combination Synergy Analysis | 1.0.0 | ● Enabled | 6935e819-1d83-43cd-ac0a-d5ce0d09eadf | |
| 647 | pharmacogenomics | nextflow | drug_repurposing | Drug Repurposing via LINCS Connectivity Map | 1.0.0 | ● Enabled | 7d384d47-1a35-4ef8-ab12-1dac60c5ef4c | |
| 50 | clinical | nextflow | drug_response_prediction_v1 | Drug Response Prediction Pipeline | 1.0.0 | ● Enabled | 35b474e9-12e3-41e5-9d07-9aef4a76060a | |
| 51 | multimodal | nextflow | target_identification_v1 | Drug Target Identification Pipeline | 1.0.0 | ● Enabled | 62b59778-67bc-4b6a-bdac-060eb79a1f9f | |
| 274 | multimodal | nextflow | ecological_genomics_biodiversity_metrics | Ecological Genomics Biodiversity Metrics | 1.0.0 | ● Enabled | 59404e78-d034-49b1-9659-aefb44d0b30a | |
| 275 | multimodal | nextflow | ecological_genomics_community_ecology | Ecological Genomics Community Ecology | 1.0.0 | ● Enabled | e1ee3f63-6060-4035-bfb1-fb1267f0e3e0 | |
| 276 | multimodal | nextflow | ecological_genomics_conservation_genetic | Ecological Genomics Conservation Genetic | 1.0.0 | ● Enabled | aaf7bd13-3eb8-4e2c-82c6-9a65c7f05d36 | |
| 277 | multimodal | nextflow | ecological_genomics_edna_metabarcoding | Ecological Genomics Edna Metabarcoding | 1.0.0 | ● Enabled | 4540fe83-75be-44f7-9584-1cc083bd86d9 | |
| 278 | multimodal | nextflow | ecological_genomics_landscape_genomics | Ecological Genomics Landscape Genomics | 1.0.0 | ● Enabled | 380a02e9-aa80-4098-9b41-11daebb3aa30 | |
| 279 | multimodal | nextflow | ecological_genomics_species_delimitation | Ecological Genomics Species Delimitation | 1.0.0 | ● Enabled | 3c151bdc-8b6c-42dc-a5d1-97ab46e5123b | |
| 215 | clinical | nextflow | effect_measures | Effect Measures | 1.0.0 | ● Enabled | 5c4b7473-424d-4a87-84f8-a9e07c9c8ae4 | |
| 191 | funcgen | nextflow | effector_gene_prioritization | Effector Gene Prioritization | 1.0.0 | ● Enabled | dec054a5-c7ce-4d8f-a25b-c5909e3e3d13 | |
| 405 | clinical | nextflow | enrichment_visualization | Enrichment Visualization | 1.0.0 | ● Enabled | 139c7c4f-1db3-4668-bebb-fd84b604aa7c | |
| 444 | clinical | nextflow | enzyme_selection | Enzyme Selection | 1.0.0 | ● Enabled | 686144c9-1a68-45ce-a612-f19364e57ddc | |
| 280 | multimodal | nextflow | epidemiological_genomics_amr_surveillanc | Epidemiological Genomics Amr Surveillanc | 1.0.0 | ● Enabled | 57679bbb-f652-40eb-b7fe-0589427f6624 | |
| 281 | multimodal | nextflow | epidemiological_genomics_pathogen_typing | Epidemiological Genomics Pathogen Typing | 1.0.0 | ● Enabled | 52e5bf2c-7a5d-4d17-b53c-73599ffccf82 | |
| 282 | multimodal | nextflow | epidemiological_genomics_phylodynamics | Epidemiological Genomics Phylodynamics | 1.0.0 | ● Enabled | c355c24c-e9d3-47d1-b0d9-5481a5087428 | |
| 283 | multimodal | nextflow | epidemiological_genomics_transmission_in | Epidemiological Genomics Transmission In | 1.0.0 | ● Enabled | 101de8f9-643e-4e87-a40a-0a10517cfb9f | |
| 284 | multimodal | nextflow | epidemiological_genomics_variant_surveil | Epidemiological Genomics Variant Surveil | 1.0.0 | ● Enabled | b07c1996-5a67-459e-b79c-53231806a614 | |
| 84 | epigenomics | nextflow | epigenomics_v1 | Epigenomics Integrated Pipeline v1 | 1.0.2 | ● Enabled | e417e226-b6b0-466f-94e9-a985e737d006 | |
| 358 | clinical | nextflow | epitope_prediction | Epitope Prediction | 1.0.0 | ● Enabled | e8fbcf49-4ee0-44dd-b66b-2ddd6402858b | |
| 285 | rnaseq | nextflow | epitranscriptomics_m6a_differential | Epitranscriptomics M6a Differential | 1.0.0 | ● Enabled | 50f5ed43-d103-4cae-8579-8536f0d11450 | |
| 286 | rnaseq | nextflow | epitranscriptomics_m6a_peak_calling | Epitranscriptomics M6a Peak Calling | 1.0.0 | ● Enabled | fb2c7cca-ab85-42ba-a9ca-118b56d85df5 | |
| 287 | rnaseq | nextflow | epitranscriptomics_m6anet_analysis | Epitranscriptomics M6anet Analysis | 1.0.0 | ● Enabled | af22f737-d8db-4907-a2cc-6b6fdb74c75b | |
| 288 | rnaseq | nextflow | epitranscriptomics_merip_preprocessing | Epitranscriptomics Merip Preprocessing | 1.0.0 | ● Enabled | 218d49a8-4b9b-4bef-86b4-55e3ecb2c774 | |
| 289 | rnaseq | nextflow | epitranscriptomics_modification_visualiz | Epitranscriptomics Modification Visualiz | 1.0.0 | ● Enabled | 74a60ebe-92aa-44f0-908a-af20ae666429 | |
| 557 | rnaseq | nextflow | epitranscriptomics_viz | Epitranscriptomics Visualization | 1.0.0 | ● Enabled | b3753536-578e-4669-a758-5fe3cf19d008 | |
| 122 | funcgen | nextflow | eqtl_mapping | eQTL Mapping | 1.0.0 | ● Enabled | 17ea3bec-e9e3-4c34-a828-989029bd2808 | |
| 560 | longread | nextflow | eukaryotic_annotation | Eukaryotic Gene Prediction | 1.0.0 | ● Enabled | efc46814-07de-4d6b-a49c-b95b56ea926a | |
| 290 | multimodal | nextflow | experimental_design_batch_design | Experimental Design Batch Design | 1.0.0 | ● Enabled | 6e1bbac2-66ad-4c63-92e4-f6b7289bb53a | |
| 291 | multimodal | nextflow | experimental_design_multiple_testing | Experimental Design Multiple Testing | 1.0.0 | ● Enabled | 9717f729-b1b2-494d-a641-410386a81b66 | |
| 292 | multimodal | nextflow | experimental_design_power_analysis | Experimental Design Power Analysis | 1.0.0 | ● Enabled | c324437c-87c2-4ab0-bf60-0f3eb6cf8558 | |
| 293 | multimodal | nextflow | experimental_design_randomization_blocki | Experimental Design Randomization Blocki | 1.0.0 | ● Enabled | b51b8fcf-3da3-46de-9ed1-578c6dc94cfe | |
| 294 | multimodal | nextflow | experimental_design_sample_size | Experimental Design Sample Size | 1.0.0 | ● Enabled | 0341aead-8de2-4616-99d3-933658ea1564 | |
| 295 | multimodal | nextflow | expression_matrix_counts_ingest | Expression Matrix Counts Ingest | 1.0.0 | ● Enabled | 4e73a781-d621-477a-8b4a-fcc5e5e7cb5a | |
| 296 | multimodal | nextflow | expression_matrix_gene_id_mapping | Expression Matrix Gene Id Mapping | 1.0.0 | ● Enabled | ebf4ffb4-bd12-4414-be57-d30460c3808e | |
| 297 | multimodal | nextflow | expression_matrix_metadata_joins | Expression Matrix Metadata Joins | 1.0.0 | ● Enabled | 783b820e-bdfa-44c3-91b3-84b221dac1d2 | |
| 298 | multimodal | nextflow | expression_matrix_normalization | Expression Matrix Normalization | 1.0.0 | ● Enabled | 3f327b07-88dc-4a4a-b634-80b7b13c2cae | |
| 299 | multimodal | nextflow | expression_matrix_sparse_handling | Expression Matrix Sparse Handling | 1.0.0 | ● Enabled | 2695ffd4-a503-4bac-b7d5-3d6a062f50d2 | |
| 106 | epigenomics | nextflow | faire_seq | FAIRE-seq | 1.0.0 | ● Enabled | 1d130fb7-f130-4388-8b71-5cfb36a0b461 | |
| 439 | clinical | nextflow | fastp_workflow | Fastp Workflow | 1.0.0 | ● Enabled | 68b5e70b-e933-4f61-9ed3-733c5aa52e40 | |
| 460 | clinical | nextflow | fastq_quality | Fastq Quality | 1.0.0 | ● Enabled | 87fc396f-7f5f-411b-a413-061dab79b157 | |
| 453 | rnaseq | nextflow | featurecounts_counting | Featurecounts Counting | 1.0.0 | ● Enabled | d8cf368b-d649-47f6-87f5-5630c1d1ed0e | |
| 461 | clinical | nextflow | filter_sequences | Filter Sequences | 1.0.0 | ● Enabled | d8526b88-0c20-4667-8d28-975de34af469 | |
| 503 | clinical | nextflow | filtering_best_practices | Filtering Best Practices | 1.0.0 | ● Enabled | 068734f7-6b20-4b9a-8fb5-f28b2b5ae80d | |
| 180 | funcgen | nextflow | fine_mapping | Fine-mapping with SuSiE | 1.0.0 | ● Enabled | 3ff91638-45b7-4095-8e75-0fc1214e441c | |
| 628 | longread | nextflow | flair_longread_splicing | FLAIR Long-read Splicing Analysis | 1.0.0 | ● Enabled | f98cf2e8-1a63-45ba-a4ce-7c3ce46ac65b | |
| 300 | multimodal | nextflow | flow_cytometry_bead_normalization | Flow Cytometry Bead Normalization | 1.0.0 | ● Enabled | 7c3933d9-8168-45d8-835b-5072562a28d3 | |
| 301 | multimodal | nextflow | flow_cytometry_clustering_phenotyping | Flow Cytometry Clustering Phenotyping | 1.0.0 | ● Enabled | 161b3d07-1372-415b-8e00-68cb1c76332e | |
| 624 | singlecell | nextflow | flow_cytometry_comp | Flow Cytometry Compensation and Transformation | 1.0.0 | ● Enabled | fcf19de9-1d39-4f1c-86d6-aee129bf4258 | |
| 302 | multimodal | nextflow | flow_cytometry_compensation_transformati | Flow Cytometry Compensation Transformati | 1.0.0 | ● Enabled | bd7cf2b9-15f5-4d35-abde-6cd07ba28021 | |
| 303 | multimodal | nextflow | flow_cytometry_cytometry_qc | Flow Cytometry Cytometry QC | 1.0.0 | ● Enabled | bc48b185-d3f5-4a39-807e-1ad35eee41ac | |
| 304 | multimodal | nextflow | flow_cytometry_differential_analysis | Flow Cytometry Differential Analysis | 1.0.0 | ● Enabled | f1520b3f-3022-47ff-af1f-9baae008936f | |
| 305 | multimodal | nextflow | flow_cytometry_doublet_detection | Flow Cytometry Doublet Detection | 1.0.0 | ● Enabled | 3a664030-19ff-47f0-b424-2b210b7b809b | |
| 306 | multimodal | nextflow | flow_cytometry_fcs_handling | Flow Cytometry Fcs Handling | 1.0.0 | ● Enabled | cbc0d059-f10a-451b-8062-b8e4bc11d987 | |
| 307 | multimodal | nextflow | flow_cytometry_gating_analysis | Flow Cytometry Gating Analysis | 1.0.0 | ● Enabled | a71defbf-3033-492f-bbe6-7f4d9a1f99d0 | |
| 486 | multimodal | nextflow | flux_balance_analysis | Flux Balance Analysis | 1.0.0 | ● Enabled | 97d18ab5-6293-434a-8fc6-2610ecf0438d | |
| 462 | clinical | nextflow | format_conversion | Format Conversion | 1.0.0 | ● Enabled | 59b11b2d-ceee-471f-9611-8a517b613ca1 | |
| 364 | clinical | nextflow | fragment_analysis | Fragment Analysis | 1.0.0 | ● Enabled | ebcde9a8-dcaa-43cd-a1aa-e94cf830605a | |
| 445 | clinical | nextflow | fragment_analysis_v2 | Fragment Analysis v2 | 1.0.0 | ● Enabled | 1a8be85c-f035-4684-9947-ffd4628729aa | |
| 113 | longread | nextflow | fulllen_16s | Full-length 16S | 1.0.0 | ● Enabled | 8cde4e1d-53a6-4e00-b517-922d96654f8d | |
| 398 | microbiome | nextflow | functional_prediction | Functional Prediction | 1.0.0 | ● Enabled | 32aa0f2c-8b26-4a8e-b8cc-9d750f0f59cb | |
| 99 | clinical | nextflow | fusion_detection | Fusion Detection | 1.0.0 | ● Enabled | e6cd115e-45bc-48ed-8262-c02f76e52c4f | |
| 639 | funcgen | nextflow | fusion_twas | FUSION TWAS Analysis | 1.0.0 | ● Enabled | c894045a-a0f4-4d03-9f1b-b09c00ec0371 | |
| 144 | clinical | nextflow | gatk_germline_v2 | GATK Germline Variant Calling v2 | 1.0.0 | ● Enabled | 303f9bad-1846-4f0c-8b5f-af9f9e33afff | |
| 147 | clinical | nextflow | gatk_cnv_v2 | GATK Somatic CNV Calling v2 | 1.0.0 | ● Enabled | c8d5a9c7-629c-4e87-863c-151be223218f | |
| 504 | clinical | nextflow | gatk_variant_calling | Gatk Variant Calling | 1.0.0 | ● Enabled | 255acea5-b910-4ab9-80e1-77c9003c1eea | |
| 37 | clinical | nextflow | omnibioai_gatk_nextflow_v1 | GATK4 Germline Variant Calling (Nextflow) | 0.1.0 | ● Enabled | 42bc5b99-309d-4851-bad0-d96943150078 | |
| 487 | multimodal | nextflow | gene_essentiality | Gene Essentiality | 1.0.0 | ● Enabled | 9ab8f4c1-bb23-49c6-b09b-c20f4d0295ec | |
| 237 | funcgen | nextflow | gene_family_evolution | Gene Family Evolution | 1.0.0 | ● Enabled | c3142afa-75ab-4179-a173-953c85e5713d | |
| 308 | multimodal | nextflow | gene_regulatory_networks_coexpression_ne | Gene Regulatory Networks Coexpression Ne | 1.0.0 | ● Enabled | 39ba2a48-50bd-4117-8dc6-5a249375cf2a | |
| 309 | multimodal | nextflow | gene_regulatory_networks_differential_ne | Gene Regulatory Networks Differential Ne | 1.0.0 | ● Enabled | ed67f4f2-28df-4f6e-be02-0421f00ca5da | |
| 310 | multimodal | nextflow | gene_regulatory_networks_grn_inference | Gene Regulatory Networks GRN Inference | 1.0.0 | ● Enabled | bb377264-a955-45a5-b406-4b419118e469 | |
| 311 | multimodal | nextflow | gene_regulatory_networks_multiomics_grn | Gene Regulatory Networks Multiomics GRN | 1.0.0 | ● Enabled | e7954193-9c92-4abd-a487-319fee138804 | |
| 312 | multimodal | nextflow | gene_regulatory_networks_perturbation_si | Gene Regulatory Networks Perturbation Si | 1.0.0 | ● Enabled | f5696edb-197e-4baa-a094-461b187d01f1 | |
| 313 | multimodal | nextflow | gene_regulatory_networks_scenic_regulons | Gene Regulatory Networks Scenic Regulons | 1.0.0 | ● Enabled | 45547f60-3493-4076-9428-7ca49873846b | |
| 238 | funcgen | nextflow | gene_tree_species_tree_reconciliation | Gene Tree Species Tree Reconciliation | 1.0.0 | ● Enabled | 23951554-76c1-4847-964c-4442e62ff612 | |
| 192 | funcgen | nextflow | genetic_correlation | Genetic Correlation | 1.0.0 | ● Enabled | 0baad1af-d84e-496f-be14-2daad66b29e3 | |
| 314 | multimodal | nextflow | genome_annotation_annotation_qc | Genome Annotation Annotation QC | 1.0.0 | ● Enabled | 5ef1cfc4-5f5b-4325-8367-b3372dfa7184 | |
| 315 | multimodal | nextflow | genome_annotation_annotation_transfer | Genome Annotation Annotation Transfer | 1.0.0 | ● Enabled | c93012de-7af4-46d9-996b-110ca30e4332 | |
| 316 | multimodal | nextflow | genome_annotation_eukaryotic_gene_predic | Genome Annotation Eukaryotic Gene Predic | 1.0.0 | ● Enabled | 2abbb98e-e540-4991-8256-f94daa2fd4dc | |
| 317 | multimodal | nextflow | genome_annotation_functional_annotation | Genome Annotation Functional Annotation | 1.0.0 | ● Enabled | b14f4fb2-f6e9-4430-900b-9d318d014eab | |
| 318 | multimodal | nextflow | genome_annotation_ncrna_annotation | Genome Annotation NCRNA Annotation | 1.0.0 | ● Enabled | 41a473e0-a9df-4e9f-ba3f-e2de08216c56 | |
| 319 | multimodal | nextflow | genome_annotation_prokaryotic_annotation | Genome Annotation Prokaryotic Annotation | 1.0.0 | ● Enabled | 129b35a8-f5c3-4636-acbd-d18586dfa20a | |
| 320 | multimodal | nextflow | genome_annotation_repeat_annotation | Genome Annotation Repeat Annotation | 1.0.0 | ● Enabled | f6fff721-446a-427e-8056-be6c47c5397b | |
| 561 | longread | nextflow | genome_comparison | Genome Comparison and Alignment | 1.0.0 | ● Enabled | 3ed31899-5c14-46fc-8732-413718a05e47 | |
| 239 | funcgen | nextflow | genome_distance_and_species_delineation | Genome Distance And Species Delineation | 1.0.0 | ● Enabled | 15f260db-32ca-4323-b711-8733c003dc27 | |
| 324 | longread | nextflow | genome_profiling | Genome Profiling | 1.0.0 | ● Enabled | 030b499c-8728-4265-a590-2963505f6c56 | |
| 193 | funcgen | nextflow | genomic_sem | Genomic Sem | 1.0.0 | ● Enabled | f7d999ac-9041-4548-83df-f8a052fed0e0 | |
| 555 | microbiome | nextflow | transmission_inference | Genomic Transmission Inference | 1.0.0 | ● Enabled | 35249df2-6ff5-46be-9fd7-2561694119d0 | |
| 556 | clinical | nextflow | variant_surveillance | Genomic Variant Surveillance | 1.0.0 | ● Enabled | 32b7b1c7-f348-4722-b2ec-fa8d8fdc02f8 | |
| 411 | funcgen | nextflow | genotype_imputation | Genotype Imputation | 1.0.0 | ● Enabled | 0d32de0f-5097-451a-9da7-117af65fe679 | |
| 532 | rnaseq | nextflow | geo_data_access | GEO Data Access | 1.0.0 | ● Enabled | 8500ea54-ec10-4b28-81a5-92ad504e9d70 | |
| 480 | multimodal | nextflow | geometric_analysis | Geometric Analysis | 1.0.0 | ● Enabled | 38144ff2-1103-4049-bf72-f9cff710aa59 | |
| 135 | proteomics | nextflow | glycoproteomics | Glycoproteomics | 1.0.0 | ● Enabled | 181793ea-9e46-49b3-a230-a84dda4fcc4a | |
| 406 | clinical | nextflow | go_enrichment | GO Enrichment | 1.0.0 | ● Enabled | cb94ce06-afda-4fda-98c0-91fac00bca7f | |
| 559 | funcgen | nextflow | grn_perturbation | GRN Perturbation Simulation | 1.0.0 | ● Enabled | a3440beb-4b3d-4316-bba8-fec22315a17a | |
| 331 | funcgen | nextflow | grna_design | Grna Design | 1.0.0 | ● Enabled | cf354ea3-a340-4ef8-bd35-cc9a135b7453 | |
| 407 | clinical | nextflow | gsea | GSEA | 1.0.0 | ● Enabled | 9b7e651a-6857-4617-bbfa-d8235f096ec2 | |
| 533 | funcgen | nextflow | gtex_expression_query | GTEX Expression Query | 1.0.0 | ● Enabled | 6679be26-9d45-4ec0-8089-dadcdc63efca | |
| 339 | funcgen | nextflow | gtf_gff_handling | GTF GFF Handling | 1.0.0 | ● Enabled | 778344b5-9ed1-4023-bf9f-8c3be91a9f88 | |
| 623 | clinical | nextflow | gwas_prs_analysis | GWAS and Polygenic Risk Score | 1.0.0 | ● Enabled | 216986e6-3763-45f1-9908-b36bb9ebf412 | |
| 121 | funcgen | nextflow | gwas_pipeline | GWAS Pipeline | 1.0.0 | ● Enabled | 7b873738-70d0-4747-8d6b-cc5e2e0c2dd6 | |
| 412 | funcgen | nextflow | haplotype_phasing | Haplotype Phasing | 1.0.0 | ● Enabled | c57d8e11-f3e8-4657-943f-44de26bcf635 | |
| 332 | funcgen | nextflow | hdr_template_design | Hdr Template Design | 1.0.0 | ● Enabled | 271607e0-0440-480b-90cc-6919ecc7cdc5 | |
| 562 | singlecell | nextflow | hdwgcna_coex | hdWGCNA Co-expression Network Analysis | 1.0.0 | ● Enabled | 60c42fae-697d-4593-8c87-d4d9210bb585 | |
| 516 | singlecell | nextflow | hdwgcna_coexpression | Hdwgcna Coexpression | 1.0.0 | ● Enabled | e09698be-750e-4367-82fc-c90ca7579a6c | |
| 194 | funcgen | nextflow | heritability_partitioning | Heritability Partitioning | 1.0.0 | ● Enabled | b01beafa-4c21-4eeb-a397-fd37b591549e | |
| 240 | funcgen | nextflow | hgt_detection | Hgt Detection | 1.0.0 | ● Enabled | f575bfde-87fd-4ab1-9d31-edc94324e72b | |
| 62 | funcgen | nextflow | hic_analysis_v1 | Hi-C Chromatin Conformation | 1.0.0 | ● Enabled | ec5fd802-e983-4f80-93ef-2705f7f4eeec | |
| 563 | funcgen | nextflow | hic_compartment | Hi-C Compartment Analysis | 1.0.0 | ● Enabled | 34368721-e368-4bfb-8045-95c750527ccd | |
| 567 | funcgen | nextflow | hic_visualization_v2 | Hi-C Contact Map Visualization | 1.0.0 | ● Enabled | 436eccc2-037a-425d-b3e0-0155f00555c7 | |
| 564 | funcgen | nextflow | hic_contact_pairs | Hi-C Contact Pair Processing | 1.0.0 | ● Enabled | cdfedc78-25e2-49e0-a349-075bdf572794 | |
| 565 | funcgen | nextflow | hic_data_io_v2 | Hi-C Data I/O and Format Conversion | 1.0.0 | ● Enabled | 8f70f3ab-b643-4c8b-b967-530d727d7124 | |
| 181 | funcgen | nextflow | hic_loop_calling | Hi-C Loop Calling with cooltools | 1.0.0 | ● Enabled | ea6cc13c-8459-4063-8ab6-57d9a1c61dca | |
| 569 | funcgen | nextflow | hic_matrix_ops_v2 | Hi-C Matrix Operations | 1.0.0 | ● Enabled | 9a9db4dc-769b-42c0-a049-6ef33ff95fa7 | |
| 345 | funcgen | nextflow | hic_data_io | HIC Data Io | 1.0.0 | ● Enabled | 7d6d6a28-b9d0-48bc-b213-dfc25d050029 | |
| 346 | funcgen | nextflow | hic_differential | HIC Differential | 1.0.0 | ● Enabled | 2116e75d-ad69-464c-b1ae-6d8b9401624d | |
| 347 | funcgen | nextflow | hic_visualization | HIC Visualization | 1.0.0 | ● Enabled | 600fbc9c-17ea-42d9-a9c9-f107d5b6a1d9 | |
| 348 | funcgen | nextflow | hichip_plac_loops | Hichip Plac Loops | 1.0.0 | ● Enabled | 074ea0fc-3aab-4aa6-a48f-a36eebd4e986 | |
| 568 | funcgen | nextflow | hichip_loops_v2 | HiChIP/PLAC-seq Loop Calling | 1.0.0 | ● Enabled | fbcd1d07-9b46-4521-a1b1-60f24476087c | |
| 325 | longread | nextflow | hifi_assembly | Hifi Assembly | 1.0.0 | ● Enabled | 80759116-9200-461e-a17f-2f237caf530c | |
| 74 | spatial | nextflow | spatial_hd_v1 | High-Definition Spatial Transcriptomics | 1.0.0 | ● Enabled | 2a2969c9-0da1-4310-8271-a328b66a02dc | |
| 435 | clinical | nextflow | hisat2_alignment | Hisat2 Alignment | 1.0.0 | ● Enabled | 91c2f2c9-56c3-4e09-ab7f-e53eb101ae0c | |
| 61 | clinical | nextflow | hla_typing_v1 | HLA Typing | 1.0.0 | ● Enabled | 612facbe-8a86-479c-be49-61c419116872 | |
| 168 | microbiome | nextflow | functional_profiling | HUMAnN3 Functional Profiling | 1.0.0 | ● Enabled | 83ed7137-25a5-447e-885c-1673893d1061 | |
| 127 | microbiome | nextflow | humann3_metagenomics | HUMAnN3 Metagenomics | 1.0.0 | ● Enabled | 6471fad3-0cd5-42ec-8ce6-e80f04d4ef02 | |
| 574 | spatial | nextflow | imc_phenotyping | IMC Cell Phenotyping | 1.0.0 | ● Enabled | 271feb43-a892-4ae5-9fb8-653397697793 | |
| 570 | spatial | nextflow | imc_segmentation | IMC Cell Segmentation | 1.0.0 | ● Enabled | 0a78e73f-3f04-4a5f-9ea8-8ac173318d3c | |
| 571 | spatial | nextflow | imc_preprocessing | IMC Data Preprocessing | 1.0.0 | ● Enabled | 9f36b205-2c24-4459-b674-ba599c7955f3 | |
| 572 | spatial | nextflow | imc_differential | IMC Differential Analysis | 1.0.0 | ● Enabled | 2065c329-5161-4407-8044-bea7ee3bea19 | |
| 573 | spatial | nextflow | imc_annotation | IMC Interactive Annotation | 1.0.0 | ● Enabled | 3515023e-1980-4fb4-848b-3eaf47f40aeb | |
| 575 | spatial | nextflow | imc_qc | IMC Quality Metrics | 1.0.0 | ● Enabled | 49c52392-6f16-422f-805b-41ef7884bbc0 | |
| 576 | spatial | nextflow | imc_spatial | IMC Spatial Analysis | 1.0.0 | ● Enabled | db6ceb0f-942b-437c-94ea-c93396fd86f9 | |
| 490 | singlecell | nextflow | immcantation_analysis | Immcantation Analysis | 1.0.0 | ● Enabled | ca6ad145-c187-4c37-a697-10ef4a87f59e | |
| 70 | multimodal | nextflow | immune_deconvolution_v1 | Immune Cell Deconvolution | 1.0.0 | ● Enabled | 1d4a1d36-0527-4fb8-ae95-c80c65dbf1a7 | |
| 359 | clinical | nextflow | immunogenicity_scoring | Immunogenicity Scoring | 1.0.0 | ● Enabled | 5fbaa78a-fbff-4dfd-847d-b598fc764be5 | |
| 413 | funcgen | nextflow | imputation_qc | Imputation QC | 1.0.0 | ● Enabled | dce8636a-6cef-4e32-b778-595ecf4fb044 | |
| 354 | clinical | nextflow | interactive_annotation | Interactive Annotation | 1.0.0 | ● Enabled | 2f7705dc-5eeb-4fee-a58d-c3d0d0aeabed | |
| 340 | funcgen | nextflow | interval_arithmetic | Interval Arithmetic | 1.0.0 | ● Enabled | eed36270-942e-4baf-8cbc-799c9f1ebe71 | |
| 241 | funcgen | nextflow | introgression_detection | Introgression Detection | 1.0.0 | ● Enabled | 64982396-62ee-4fac-a462-a1fe39ef4fa6 | |
| 183 | rnaseq | nextflow | isoform_switching | Isoform Switching | 1.0.0 | ● Enabled | a2a82faa-5a7d-4c2f-af39-39dca3512d37 | |
| 369 | longread | nextflow | isoseq_analysis | ISOSEQ Analysis | 1.0.0 | ● Enabled | 2c8d968d-1839-427f-ad87-ab183f2eda9b | |
| 534 | epigenomics | nextflow | jaspar_tfbs_query | Jaspar TFBS Query | 1.0.0 | ● Enabled | 50f6463f-9503-4d7e-9e38-c7a8ac524dc1 | |
| 505 | clinical | nextflow | joint_calling | Joint Calling | 1.0.0 | ● Enabled | ec3be753-4aae-4015-9acb-429366dbd244 | |
| 108 | epigenomics | nextflow | chip_atac_joint | Joint ChIP + ATAC | 1.0.0 | ● Enabled | 0e11ae4e-6695-404d-86ae-a4ccf49bb805 | |
| 515 | rnaseq | nextflow | kallisto_bustools_quant | Kallisto Bustools Quant | 1.0.0 | ● Enabled | 4c685be7-5a20-46f0-b54b-051bf5c2b499 | |
| 577 | singlecell | nextflow | kallisto_bustools | kallisto|bustools scRNA-seq Quantification | 1.0.0 | ● Enabled | 4487c90c-c9b1-4321-946b-ce2c428884c8 | |
| 535 | multimodal | nextflow | kegg_pathway_query | Kegg Pathway Query | 1.0.0 | ● Enabled | 42a6f789-9cc3-41c9-b3f7-6710c17c3c65 | |
| 408 | clinical | nextflow | kegg_pathways | KEGG Pathways | 1.0.0 | ● Enabled | 7d30a338-6504-4a05-9968-8b9f18c31838 | |
| 390 | microbiome | nextflow | kraken_classification | Kraken Classification | 1.0.0 | ● Enabled | e366cb01-47b5-4602-8e9e-2134bd3d29a6 | |
| 166 | microbiome | nextflow | kraken2_classification | Kraken2 Taxonomic Classification | 1.0.0 | ● Enabled | 2389a069-5975-4b0c-b9a1-4a6e4f09f8e1 | |
| 638 | clinical | nextflow | ldsc_genetic_correlation | LDSC Genetic Correlation | 1.0.0 | ● Enabled | a4984b4c-9c00-44b8-9c3b-4357ab5afa3c | |
| 637 | clinical | nextflow | ldsc_heritability | LDSC Heritability Analysis | 1.0.0 | ● Enabled | cfe7c5f6-fbb9-47af-bf15-34016082b8cd | |
| 416 | funcgen | nextflow | linkage_disequilibrium | Linkage Disequilibrium | 1.0.0 | ● Enabled | eb895197-6c25-4d24-ac93-baaa3315b80e | |
| 136 | proteomics | nextflow | lipidomics | Lipidomics | 1.0.0 | ● Enabled | 16191407-2ca8-41fb-9ce0-46f1f1715a24 | |
| 381 | multimodal | nextflow | lipidomics | Lipidomics | 1.0.0 | ● Enabled | 1ebd25a4-bdc7-4e23-a2bf-4db85f9e7f3b | |
| 216 | clinical | nextflow | logistic_regression | Logistic Regression | 1.0.0 | ● Enabled | bdf4011a-5635-448e-9d96-6e3f8f1d4875 | |
| 56 | rnaseq | nextflow | lncrna_analysis_v1 | Long Non-coding RNA Analysis Pipeline | 1.0.0 | ● Enabled | cbdd3a14-f0b7-423e-98ea-bc273f9ea224 | |
| 370 | longread | nextflow | long_read_alignment | Long Read Alignment | 1.0.0 | ● Enabled | d7fc6334-1106-4f78-aca2-33e575285265 | |
| 326 | longread | nextflow | long_read_assembly | Long Read Assembly | 1.0.0 | ● Enabled | b1e7989e-c7f9-439b-a496-696db106f791 | |
| 371 | longread | nextflow | long_read_qc | Long Read QC | 1.0.0 | ● Enabled | 8a391d31-0b6d-4574-a0b4-e54e8d2df872 | |
| 184 | rnaseq | nextflow | long_read_splicing | Long Read Splicing | 1.0.0 | ● Enabled | 4988f609-6af3-436a-af14-99394a994b72 | |
| 581 | longread | nextflow | longread_alignment | Long-read Alignment | 1.0.0 | ● Enabled | 255ea587-0270-4af6-8919-49c7a267bb64 | |
| 67 | longread | nextflow | long_read_rna_v1 | Long-Read RNA-seq | 1.0.0 | ● Enabled | db1d4e26-5e7b-4534-8f35-89632b7e6e7d | |
| 580 | longread | nextflow | longread_agent_wf | Long-read Sequencing Agent Workflow | 1.0.0 | ● Enabled | 97fe1821-8ce0-44ee-8f0b-d83f03f43ddd | |
| 582 | longread | nextflow | longread_qc | Long-read Sequencing QC | 1.0.0 | ● Enabled | 969b18d7-33b2-498e-9dc5-3eb7fe747df3 | |
| 111 | longread | nextflow | longread_sv | Long-read SV | 1.0.0 | ● Enabled | c29cf95c-1aaf-44f3-9773-4c5dd5b2c7d1 | |
| 173 | longread | nextflow | longread_sv_v2 | Long-read SV Calling v2 | 1.0.0 | ● Enabled | c13cc476-3c27-4ad9-a689-c834f1022720 | |
| 365 | clinical | nextflow | longitudinal_monitoring | Longitudinal Monitoring | 1.0.0 | ● Enabled | 04c99185-d405-4352-b563-f3f6e01b7ca4 | |
| 349 | funcgen | nextflow | loop_calling | Loop Calling | 1.0.0 | ● Enabled | 01d422d2-18a3-4a99-8c3e-84274b7a25e3 | |
| 233 | epigenomics | nextflow | m6a_clip | M6a Clip | 1.0.0 | ● Enabled | 70c75b13-f4f4-4187-8497-e2db2bddfcc0 | |
| 165 | rnaseq | nextflow | m6a_peak_calling | m6A Peak Calling with exomePeak2 | 1.0.0 | ● Enabled | 12ef3718-b1ac-4bb5-9ad2-82d106353a90 | |
| 131 | microbiome | nextflow | mag_assembly | MAG Assembly | 1.0.0 | ● Enabled | eb02c666-56f2-4c77-8d44-204e5e94ec8c | |
| 177 | funcgen | nextflow | mageck_screen | MAGeCK CRISPR Screen Analysis | 1.0.0 | ● Enabled | 42cd12b1-c392-4bd2-92e0-3f11d7fd52b0 | |
| 645 | crispr | nextflow | mageck_crispr | MAGeCK CRISPR Screen Analysis | 1.0.0 | ● Enabled | e7bd1a01-60c4-4b50-b1db-6bd14bbcb1e0 | |
| 63 | proteomics | nextflow | proteomics_ms_v1 | Mass Spectrometry Proteomics | 1.0.0 | ● Enabled | 307c8278-347c-44ec-b1cc-e681ac910fd6 | |
| 350 | funcgen | nextflow | matrix_operations | Matrix Operations | 1.0.0 | ● Enabled | 5d707f1f-0287-4cf5-b13f-ad75f92326d0 | |
| 372 | longread | nextflow | medaka_polishing | Medaka Polishing | 1.0.0 | ● Enabled | d4ea7b18-bddd-44d2-8bd9-b3bc1d3836c0 | |
| 195 | funcgen | nextflow | mediation_analysis | Mediation Analysis | 1.0.0 | ● Enabled | 780cd49a-709a-439c-93d5-9b6b48ea4841 | |
| 587 | multimodal | nextflow | simpleitk_registration_v2 | Medical Image Registration | 1.0.0 | ● Enabled | 840b4b51-5e79-49ec-8a9d-017b3956f9aa | |
| 179 | funcgen | nextflow | mendelian_randomization | Mendelian Randomization with TwoSampleMR | 1.0.0 | ● Enabled | 840a9d41-c6ff-4bb5-bdc7-5726f7f91624 | |
| 488 | multimodal | nextflow | metabolic_reconstruction | Metabolic Reconstruction | 1.0.0 | ● Enabled | 749b2b73-7f17-4ac0-81d1-7cf69a6af757 | |
| 382 | multimodal | nextflow | metabolite_annotation | Metabolite Annotation | 1.0.0 | ● Enabled | d2f8cc66-c2aa-4d8a-a69f-d67317ad637e | |
| 139 | multimodal | nextflow | metabolomics_lcms | Metabolomics LC-MS | 1.0.0 | ● Enabled | 08f75eef-e603-4baa-bfdb-edaaf9dee324 | |
| 327 | longread | nextflow | metagenome_assembly | Metagenome Assembly | 1.0.0 | ● Enabled | d4b3d5f4-42f9-4a4e-b777-fca882f8196f | |
| 391 | microbiome | nextflow | metagenome_visualization | Metagenome Visualization | 1.0.0 | ● Enabled | b19b6889-a610-4a2c-acf4-b628fb0c900a | |
| 49 | microbiome | nextflow | metagenomics_taxprofiler | Metagenomics Taxonomic Profiling Pipeline | 1.0.0 | ● Enabled | 7bee0b0e-1d62-4064-9276-95ba6cdaac55 | |
| 167 | microbiome | nextflow | metaphlan_profiling | MetaPhlAn4 Profiling | 1.0.0 | ● Enabled | 92653a66-734a-41c0-a2a5-785def751889 | |
| 129 | microbiome | nextflow | metatranscriptomics | Metatranscriptomics | 1.0.0 | ● Enabled | 8d9acf1f-f200-466c-8cdb-bebe58c77841 | |
| 366 | clinical | nextflow | methylation_based_detection | Methylation Based Detection | 1.0.0 | ● Enabled | b81c47c5-34e1-4eba-b248-8dcc68268335 | |
| 393 | epigenomics | nextflow | methylation_calling | Methylation Calling | 1.0.0 | ● Enabled | 4d2e7cc6-c58f-4022-a820-5c9c5bcbdcdd | |
| 394 | epigenomics | nextflow | methylkit_analysis | Methylkit Analysis | 1.0.0 | ● Enabled | d31133f3-2689-4398-a52e-6c6fdfdb393b | |
| 360 | clinical | nextflow | mhc_binding_prediction | MHC Binding Prediction | 1.0.0 | ● Enabled | 8267e4a7-8283-47cb-9ca8-298e302dd67a | |
| 124 | funcgen | nextflow | micro_c | Micro-C / Hi-C | 1.0.0 | ● Enabled | 7a7398f4-c2de-44f1-90ea-4d7b366b26d0 | |
| 589 | microbiome | nextflow | microbiome_cancer | Microbiome-Cancer Association Analysis | 1.0.0 | ● Enabled | 8b19e118-5392-4ca6-9b85-a0839af6c304 | |
| 55 | rnaseq | nextflow | mirna_seq_v1 | microRNA-seq Analysis Pipeline | 1.0.0 | ● Enabled | a0131856-8cd1-408d-9b74-7e3b6bdbb191 | |
| 105 | epigenomics | nextflow | mint_chip | MINT-ChIP | 1.0.0 | ● Enabled | 2c403571-c688-4a9e-9ded-a6ccf6422a9f | |
| 475 | rnaseq | nextflow | mirdeep2_analysis | Mirdeep2 Analysis | 1.0.0 | ● Enabled | aadd647e-a61a-488b-a765-b758cebf2b4a | |
| 613 | rnaseq | nextflow | mirdeep2_discovery | miRDeep2 miRNA Discovery | 1.0.0 | ● Enabled | aa2ae7b5-736e-44d1-bbca-056199226e3a | |
| 476 | rnaseq | nextflow | mirge3_analysis | Mirge3 Analysis | 1.0.0 | ● Enabled | 8b7803f1-6e77-49f7-88cb-8cf3093e46c8 | |
| 614 | rnaseq | nextflow | mirge3_quantification | miRge3 miRNA Quantification | 1.0.0 | ● Enabled | c69f2380-22d4-4ce2-880f-983373f555e3 | |
| 164 | rnaseq | nextflow | mirna_mirdeep2 | miRNA Analysis with miRDeep2 | 1.0.0 | ● Enabled | d3b5fd0c-db6a-4708-b990-bdd3331ccf5d | |
| 615 | rnaseq | nextflow | mirna_target_prediction | miRNA Target Prediction | 1.0.0 | ● Enabled | 8c75eb6a-854c-4ea5-b315-eb4a2d560a03 | |
| 217 | clinical | nextflow | missing_data_sensitivity | Missing Data Sensitivity | 1.0.0 | ● Enabled | 1000730c-73bc-4c88-a703-4fc2f54eaf2a | |
| 491 | singlecell | nextflow | mixcr_analysis | Mixcr Analysis | 1.0.0 | ● Enabled | 4173eb1f-d507-469a-8b50-6b37c880c10f | |
| 619 | singlecell | nextflow | mixcr_vdj | MiXCR V(D)J Recombination Analysis | 1.0.0 | ● Enabled | 7f6cb433-034d-46e6-972d-1f4d39999845 | |
| 402 | multimodal | nextflow | mixomics_analysis | Mixomics Analysis | 1.0.0 | ● Enabled | a1f3ffcb-675a-4dad-ba03-af09e483ca61 | |
| 489 | multimodal | nextflow | model_curation | Model Curation | 1.0.0 | ● Enabled | 9e3592e1-2e6f-4408-bedb-7a49bd5930c9 | |
| 377 | multimodal | nextflow | model_validation | Model Validation | 1.0.0 | ● Enabled | f6aeb8dd-ec70-4ee9-83c3-f5c344ce2e4b | |
| 481 | multimodal | nextflow | modern_structure_prediction | Modern Structure Prediction | 1.0.0 | ● Enabled | e5265913-c79d-4218-b7aa-8c7dd95970fb | |
| 403 | multimodal | nextflow | mofa_integration | MOFA Integration | 1.0.0 | ● Enabled | 6b2639d0-0e3a-47ca-af91-b77bbfcd0070 | |
| 137 | proteomics | nextflow | mofa2_integration | MOFA2 Multi-Omics Integration | 1.0.0 | ● Enabled | da7e3aa7-5441-49ee-bcad-452a00db1014 | |
| 206 | epigenomics | nextflow | motif_analysis | Motif Analysis | 1.0.0 | ● Enabled | 6f298319-437e-4eb8-98fa-b456c42e102c | |
| 468 | clinical | nextflow | motif_search | Motif Search | 1.0.0 | ● Enabled | 7c0fcda6-047f-4a42-9cf2-2c4ec373024a | |
| 590 | singlecell | nextflow | mrvi_multiresolution | MrVI Multi-resolution Single-cell Integration | 1.0.0 | ● Enabled | 495389e1-d34e-4a87-a717-1e15b4833240 | |
| 517 | singlecell | nextflow | mrvi_multisample | Mrvi Multisample | 1.0.0 | ● Enabled | a2d83bbb-16e1-415f-8471-6fb1e41300f7 | |
| 383 | multimodal | nextflow | msdial_preprocessing | Msdial Preprocessing | 1.0.0 | ● Enabled | 6701df99-14b9-4dc3-aafd-bdc150a78389 | |
| 97 | clinical | nextflow | msi_tmb_profiling | MSI / TMB Profiling | 1.0.0 | ● Enabled | a53e2896-a3ab-489c-a6cf-c06095a25bdf | |
| 69 | multimodal | nextflow | multimodal_integration_v1 | Multi-Omics Integration | 1.0.0 | ● Enabled | 63fd9a9d-b112-4573-9abd-8407bec494e5 | |
| 40 | multimodal | nextflow | omnibioai_multiomics_nextflow_v1 | Multi-omics Integration (Nextflow) | 1.0.0 | ● Enabled | 01eb0ddc-8068-4150-9e2a-b506dbb8aff5 | |
| 591 | multimodal | nextflow | multimodal_imaging | Multimodal Medical Imaging Analysis | 1.0.0 | ● Enabled | 2a493b38-4004-4147-950a-1aa95ac08e82 | |
| 651 | qc | nextflow | multimodal_qc | Multimodal QC Aggregator (MultiQC) | 1.0.0 | ● Enabled | 0c56c65c-b97f-4f30-b857-c5f91477d23b | |
| 646 | single_cell_multiomics | nextflow | multiome_archr | Multiome ArchR + Seurat WNN Analysis | 1.0.0 | ● Enabled | 6431ca0d-65e8-4eb4-baf2-01d10ed48c9c | |
| 218 | clinical | nextflow | multiplicity_graphical | Multiplicity Graphical | 1.0.0 | ● Enabled | 7fce0dbd-b034-4b02-a4d2-91f343812098 | |
| 600 | multimodal | nextflow | nan_safe_correlation | NaN-safe Correlation Analysis | 1.0.0 | ● Enabled | 28361c4d-808c-4ce9-a6dd-93626377b020 | |
| 110 | longread | nextflow | nanopore_assembly | Nanopore Assembly | 1.0.0 | ● Enabled | e5a0c47a-c463-40b5-9ea2-1b442f928368 | |
| 171 | longread | nextflow | nanopore_basecalling | Nanopore Basecalling with Dorado | 1.0.0 | ● Enabled | 5e1dc95f-d85a-427f-9051-9ef2b2bf004a | |
| 114 | longread | nextflow | nanopore_cpg_methylation | Nanopore CpG Methylation | 1.0.0 | ● Enabled | 5b92fb4c-400c-4be7-af5f-9857ff6172b8 | |
| 176 | longread | nextflow | nanopore_assembly_v2 | Nanopore De Novo Assembly v2 | 1.0.0 | ● Enabled | adecd83e-70c1-453b-b1e5-2acf7fe9f668 | |
| 112 | longread | nextflow | nanopore_direct_rna | Nanopore Direct RNA | 1.0.0 | ● Enabled | 6ff8b4f1-158c-4c64-a930-568ef67f0999 | |
| 78 | longread | nextflow | nanopore_methylation_v1 | Nanopore Long-Read Methylation | 1.0.0 | ● Enabled | 49e84800-d26d-415e-8662-6144ebd743a6 | |
| 373 | longread | nextflow | nanopore_methylation | Nanopore Methylation | 1.0.0 | ● Enabled | 9db4a81d-d2e8-4f59-b841-6aa15a6d1eb9 | |
| 174 | longread | nextflow | nanopore_methylation_v2 | Nanopore Methylation Calling v2 | 1.0.0 | ● Enabled | c61152f1-43d4-4239-b756-e317bfab711f | |
| 455 | rnaseq | nextflow | ncrna_search | NCRNA Search | 1.0.0 | ● Enabled | 80b015f2-67cb-48ef-9e8c-8ee64651a94f | |
| 98 | clinical | nextflow | neoantigen_prediction | Neoantigen Prediction | 1.0.0 | ● Enabled | b3cc6751-b1aa-4bb3-9d4d-a77bf561cbf8 | |
| 601 | multimodal | nextflow | neurokit2_signals | NeuroKit2 Biosignal Processing | 1.0.0 | ● Enabled | fc58081e-9ddb-46bb-9e36-57c452c43b94 | |
| 602 | multimodal | nextflow | neuropixels_analysis | Neuropixels Spike Sorting | 1.0.0 | ● Enabled | 938ebb0a-3590-4609-9ebc-c3cae29168a2 | |
| 603 | multimodal | nextflow | nextflow_engine | Nextflow Workflow Engine | 1.0.0 | ● Enabled | b7d3d43e-bdda-4004-a903-fdf172357644 | |
| 527 | multimodal | nextflow | nnunet_segmentation | Nnunet Segmentation | 1.0.0 | ● Enabled | 37b64b11-e559-4522-b037-4f8754ea029c | |
| 107 | epigenomics | nextflow | nome_seq | NOMe-seq | 1.0.0 | ● Enabled | 019295d5-d02c-47bb-8436-839c8a26b1f6 | |
| 384 | multimodal | nextflow | normalization_qc | Normalization QC | 1.0.0 | ● Enabled | 1fca5857-4b2b-4cde-8f13-7c32c564ae63 | |
| 333 | funcgen | nextflow | off_target_prediction | Off Target Prediction | 1.0.0 | ● Enabled | 7cb042ef-b8c2-430c-93e5-5d668fcc7dd2 | |
| 584 | multimodal | nextflow | omero_integration | OMERO Image Data Integration | 1.0.0 | ● Enabled | 9358794f-10a0-4350-a2a6-501bad563855 | |
| 378 | multimodal | nextflow | omics_classifiers | Omics Classifiers | 1.0.0 | ● Enabled | 9a7678cf-bd84-4dec-b74a-6697a9110dd0 | |
| 578 | multimodal | nextflow | opentrons_protocol | Opentrons Lab Automation | 1.0.0 | ● Enabled | 78158aaa-6d41-41d9-9d4a-edcec294671c | |
| 652 | sv | nextflow | optical_genome_mapping | Optical Genome Mapping (Bionano / OMBlast) | 1.0.0 | ● Enabled | 25215e69-167f-4d73-a5b3-407db0be96a4 | |
| 163 | rnaseq | nextflow | orf_detection | ORF Detection with RiboCode | 1.0.0 | ● Enabled | 2361ccf4-9d1f-45d6-84c8-869874bde5ac | |
| 242 | funcgen | nextflow | ortholog_inference | Ortholog Inference | 1.0.0 | ● Enabled | 440b5432-7324-47f1-8239-419da0b7a725 | |
| 185 | rnaseq | nextflow | outlier_splicing_detection | Outlier Splicing Detection | 1.0.0 | ● Enabled | 4dc75ae1-cf2a-41f5-abf5-8bb7eb5e77ad | |
| 341 | funcgen | nextflow | overlap_significance | Overlap Significance | 1.0.0 | ● Enabled | 904b3800-81ba-49e6-afe9-443e0cc45332 | |
| 109 | longread | nextflow | pacbio_hifi | PacBio HiFi | 1.0.0 | ● Enabled | 63cbcfa7-c8ed-4b53-9dff-ea2bacdae399 | |
| 175 | longread | nextflow | pacbio_hifi_assembly | PacBio HiFi Assembly with hifiasm | 1.0.0 | ● Enabled | 500a67a7-3d06-4398-a7f1-3a40cd1fcddf | |
| 463 | clinical | nextflow | paired_end_fastq | Paired End Fastq | 1.0.0 | ● Enabled | de13f8d3-cfa7-46a8-b2c4-51edeb3d7db9 | |
| 243 | funcgen | nextflow | pangenome_analysis | Pangenome Analysis | 1.0.0 | ● Enabled | f66e6c7b-e9ef-474f-b688-29d8065fa6fd | |
| 66 | longread | nextflow | pangenome_v1 | Pangenome Graph Analysis | 1.0.0 | ● Enabled | 79a3bae8-a021-406e-8ae6-ddd4ccef5e56 | |
| 585 | multimodal | nextflow | pathml_analysis_v2 | PathML Digital Pathology | 1.0.0 | ● Enabled | 5e3b0ffc-7d95-4a85-a796-dd397e0fdfb6 | |
| 528 | multimodal | nextflow | pathml_wsi_analysis | Pathml WSI Analysis | 1.0.0 | ● Enabled | b3422f92-e1fa-41a9-8156-6dc6e4efa546 | |
| 130 | microbiome | nextflow | pathogen_surveillance | Pathogen Surveillance | 1.0.0 | ● Enabled | 4b34d8ac-7375-41db-b78e-c4e3b086e2d1 | |
| 385 | multimodal | nextflow | pathway_mapping | Pathway Mapping | 1.0.0 | ● Enabled | de744697-b91d-41cc-af5f-2f7ae0f23b9a | |
| 207 | epigenomics | nextflow | peak_annotation | Peak Annotation | 1.0.0 | ● Enabled | 2948ae0d-78f5-4a80-8744-ea41e11a368e | |
| 208 | epigenomics | nextflow | peak_calling | Peak Calling | 1.0.0 | ● Enabled | 781c1c77-00be-412b-8bf9-565396acc8ec | |
| 427 | proteomics | nextflow | peptide_identification | Peptide Identification | 1.0.0 | ● Enabled | fca8dfaa-22f7-4602-aa93-bad6dd5186ed | |
| 496 | multimodal | nextflow | periodicity_detection | Periodicity Detection | 1.0.0 | ● Enabled | 608efa39-1c90-4369-ae71-3de8f58b63b5 | |
| 178 | funcgen | nextflow | perturbseq | Perturb-seq Analysis | 1.0.0 | ● Enabled | be3522ef-ce46-4079-8a87-9f2d60c2ab20 | |
| 120 | singlecell | nextflow | perturbation_seq | Perturbation-seq | 1.0.0 | ● Enabled | e5c46654-0624-43f6-83a2-28c155f8a58a | |
| 54 | clinical | nextflow | pharmacogenomics_v1 | Pharmacogenomics Analysis Pipeline | 1.0.0 | ● Enabled | 8343e1ac-34ec-4bd9-b9c0-731233efb62c | |
| 355 | clinical | nextflow | phenotyping | Phenotyping | 1.0.0 | ● Enabled | ff798301-c515-499f-a35d-b5c488c5e04b | |
| 133 | proteomics | nextflow | phosphoproteomics | Phosphoproteomics | 1.0.0 | ● Enabled | 0ecb54ad-b42f-40b5-a79e-331e490614e2 | |
| 653 | meta | nextflow | pipeline_chaining | Pipeline Chaining — Multi-Bundle Orchestration | 1.0.0 | ● Enabled | 2511c694-1b89-4c97-bd75-58ec56850b35 | |
| 196 | funcgen | nextflow | pleiotropy_detection | Pleiotropy Detection | 1.0.0 | ● Enabled | f6780998-ca2a-46c5-bc46-81cedad7a9fe | |
| 417 | funcgen | nextflow | plink_basics | Plink Basics | 1.0.0 | ● Enabled | c3785045-5c5b-42ce-9e19-408cb3c029d4 | |
| 80 | funcgen | nextflow | polygenic_risk_score_v1 | Polygenic Risk Score (PRS) | 1.0.0 | ● Enabled | 665f5316-8fab-4ec8-9020-78f080ba8f85 | |
| 58 | funcgen | nextflow | population_genetics_v1 | Population Genetics Analysis Pipeline | 1.0.0 | ● Enabled | 2b8951bb-22f2-4fcf-990c-bb8eaea0b22d | |
| 418 | funcgen | nextflow | population_structure | Population Structure | 1.0.0 | ● Enabled | d84ad59c-02f1-44f2-beb0-5315c64d8a5a | |
| 244 | funcgen | nextflow | positive_selection | Positive Selection | 1.0.0 | ● Enabled | 8f93d9be-0955-4849-b60a-98c88f379a9d | |
| 219 | clinical | nextflow | power_and_sample_size | Power And Sample Size | 1.0.0 | ● Enabled | d2c7d3d8-e2d6-4b50-8ff9-9fccab00666e | |
| 379 | multimodal | nextflow | prediction_explanation | Prediction Explanation | 1.0.0 | ● Enabled | dc388041-9855-4ebb-baa1-d4c85bfe4fc8 | |
| 334 | funcgen | nextflow | prime_editing_design | Prime Editing Design | 1.0.0 | ● Enabled | 4a035f99-7054-43d2-bd1b-eeb7829b3dd3 | |
| 421 | clinical | nextflow | primer_basics | Primer Basics | 1.0.0 | ● Enabled | e4b32d9b-2503-4e64-85e1-acca32f6d0c5 | |
| 422 | clinical | nextflow | primer_validation | Primer Validation | 1.0.0 | ● Enabled | ae987a50-6b89-4ef2-8c97-42632718fde1 | |
| 592 | proteomics | nextflow | protein_design | Protein Design Workflow | 1.0.0 | ● Enabled | 689c8949-480d-4ab5-8f90-b49728b269d4 | |
| 428 | proteomics | nextflow | protein_inference | Protein Inference | 1.0.0 | ● Enabled | e1e546be-ed1c-4c79-aac2-92aa523a577a | |
| 593 | proteomics | nextflow | protein_qc | Protein Quality Control | 1.0.0 | ● Enabled | d0a5bcfa-13fc-4bc3-b2bc-0e44135e270b | |
| 594 | proteomics | nextflow | protein_structure_pred | Protein Structure Prediction | 1.0.0 | ● Enabled | 1d6cf325-48e1-413e-b94e-0f1048a7cdcf | |
| 524 | proteomics | nextflow | proteinmpnn_sequence_design | Proteinmpnn Sequence Design | 1.0.0 | ● Enabled | cf66f274-52bf-45de-9875-4cb50807e351 | |
| 595 | proteomics | nextflow | proteinmpnn_design | ProteinMPNN Sequence Design | 1.0.0 | ● Enabled | 5eda068d-e361-4874-aa4f-a53658d2163c | |
| 138 | multimodal | nextflow | proteogenomics | Proteogenomics | 1.0.0 | ● Enabled | 492d883b-aeb4-493e-858b-1125e05fa9d9 | |
| 649 | proteomics | nextflow | proteogenomics | Proteogenomics Variant Peptide Validation | 1.0.0 | ● Enabled | 73c065f9-cf06-4de9-b61d-2943248d77a5 | |
| 197 | funcgen | nextflow | proteome_mr_drug_target | Proteome MR Drug Target | 1.0.0 | ● Enabled | 7ca5b5f8-c0d5-46d0-87ea-3f3f18797242 | |
| 429 | proteomics | nextflow | proteomics_qc | Proteomics QC | 1.0.0 | ● Enabled | f9e94c18-4ca5-419c-b894-da85a8227c3b | |
| 342 | funcgen | nextflow | proximity_operations | Proximity Operations | 1.0.0 | ● Enabled | 45762423-149b-4ee7-aef3-7d0d86b1e4ab | |
| 430 | proteomics | nextflow | ptm_analysis | PTM Analysis | 1.0.0 | ● Enabled | 7190c813-bfc9-4d80-8f2a-25bb01ca5a54 | |
| 518 | rnaseq | nextflow | pydeseq2_dge | Pydeseq2 Dge | 1.0.0 | ● Enabled | d3648046-53f6-4c50-b4b0-e290fe48056b | |
| 596 | rnaseq | nextflow | pydeseq2_de | PyDESeq2 Differential Expression | 1.0.0 | ● Enabled | bdde4a0d-509b-40fb-b63b-4783d073ed51 | |
| 529 | clinical | nextflow | pydicom_imaging | Pydicom Imaging | 1.0.0 | ● Enabled | 7dfc7394-4fc5-40f7-a5a8-817a5c0d279a | |
| 604 | multimodal | nextflow | pyhealth_ehr | PyHealth EHR Analysis | 1.0.0 | ● Enabled | fd5c726c-91f6-4efd-92ce-7124292af693 | |
| 579 | multimodal | nextflow | pylabrobot_automation | PyLabRobot Lab Automation | 1.0.0 | ● Enabled | fc94a5a2-a06c-4a7b-8820-4c0db87c14b5 | |
| 399 | microbiome | nextflow | qiime2_workflow | Qiime2 Workflow | 1.0.0 | ● Enabled | ef6a65e6-1308-4ca4-9d69-016b2b67ffd5 | |
| 423 | clinical | nextflow | qpcr_primers | Qpcr Primers | 1.0.0 | ● Enabled | 30be8bfc-8157-43a0-8b80-ec32dd744667 | |
| 440 | clinical | nextflow | quality_filtering | Quality Filtering | 1.0.0 | ● Enabled | 31845117-baa4-4335-92fc-339cac35e200 | |
| 356 | clinical | nextflow | quality_metrics | Quality Metrics | 1.0.0 | ● Enabled | b8573ee3-b5a5-437b-b4c8-26576e5b27ad | |
| 441 | clinical | nextflow | quality_reports | Quality Reports | 1.0.0 | ● Enabled | 5ae43af7-195f-4c31-8a83-7c7a54d91e0c | |
| 431 | proteomics | nextflow | quantification | Quantification | 1.0.0 | ● Enabled | 94e21139-75d9-4d0a-8a00-69383f314aa5 | |
| 409 | clinical | nextflow | reactome_pathways | Reactome Pathways | 1.0.0 | ● Enabled | ba65941f-30ab-4d11-a0b9-674e21d035d2 | |
| 464 | clinical | nextflow | read_sequences | Read Sequences | 1.0.0 | ● Enabled | d2b13386-0bee-4772-bb83-a5ebf486bcce | |
| 640 | ref_data_management | nextflow | ref_data_management | Reference Data Management | 1.0.0 | ● Enabled | dc6cb0e9-3890-4713-ac0d-54adc9bf2cf7 | |
| 414 | funcgen | nextflow | reference_panels | Reference Panels | 1.0.0 | ● Enabled | a0bb2570-e40b-4044-8597-65b60f984786 | |
| 492 | singlecell | nextflow | repertoire_visualization | Repertoire Visualization | 1.0.0 | ● Enabled | 19b98589-57ea-450d-8ea3-b0628fa33330 | |
| 597 | spatial | nextflow | resolvi_denoising | ResolVI Spatial Transcriptomics Denoising | 1.0.0 | ● Enabled | c42fb73e-16e0-4577-9cdd-b40620fd1071 | |
| 446 | clinical | nextflow | restriction_mapping | Restriction Mapping | 1.0.0 | ● Enabled | a73646dc-36bd-499b-9b2a-df9d8217fad3 | |
| 447 | clinical | nextflow | restriction_sites | Restriction Sites | 1.0.0 | ● Enabled | 764dff10-23f7-4db5-a465-98f4d2c8dc01 | |
| 469 | clinical | nextflow | reverse_complement | Reverse Complement | 1.0.0 | ● Enabled | d8edd7be-e1e1-4d68-9537-f3e7159685f0 | |
| 546 | proteomics | nextflow | rfdiffusion_binder | RFdiffusion Binder Design | 1.0.0 | ● Enabled | f735c522-2e46-4446-8e77-759924e804f3 | |
| 60 | rnaseq | nextflow | riboseq_v1 | Ribo-seq Analysis | 1.0.0 | ● Enabled | 68baf6ed-2b79-4c97-a3c0-2a161ac33f6d | |
| 162 | rnaseq | nextflow | riboseq_preprocessing | Ribo-seq Preprocessing | 1.0.0 | ● Enabled | 71937318-42e8-41df-9c7a-291c7ebe5c22 | |
| 448 | rnaseq | nextflow | ribosome_periodicity | Ribosome Periodicity | 1.0.0 | ● Enabled | 5e4e5f8c-f8d5-406e-86e1-4762c97250bf | |
| 449 | rnaseq | nextflow | ribosome_stalling | Ribosome Stalling | 1.0.0 | ● Enabled | bffa3465-b801-4d2f-a81c-024029f76c09 | |
| 626 | rnaseq | nextflow | alt_splicing_rmats | rMATS Differential Splicing | 1.0.0 | ● Enabled | a55351d1-1cac-44f9-b98b-edad6e61925d | |
| 627 | rnaseq | nextflow | alt_splicing_quantification | rMATS Splicing Quantification | 1.0.0 | ● Enabled | e99fc609-e364-4176-8159-f3bbe0a0da05 | |
| 75 | rnaseq | nextflow | rna_editing_v1 | RNA Editing Detection | 1.0.0 | ● Enabled | 73804918-5762-4547-a948-b1cc72240dd4 | |
| 115 | singlecell | nextflow | rna_velocity | RNA Velocity | 1.0.0 | ● Enabled | 2c9bb45a-14f0-41be-9684-c96139cc368b | |
| 29 | rnaseq | cwl | rnaseq_cwl_v1 | RNA-seq (CWL) v1 | 1.0.0 | ● Enabled | eaae1c6f-37db-482f-9c7c-1b86a89a5f26 | |
| 35 | rnaseq | nextflow | rnaseq_nextflow_v1 | RNA-seq (Nextflow) v1 | 1.0.2 | ● Enabled | 491dfda1-2dd0-4229-920b-8c09efcb934b | |
| 30 | rnaseq | snakemake | rnaseq_snakemake_v1 | RNA-seq (Snakemake) v1 | 1.0.0 | ● Enabled | 35efed8a-3046-434a-9492-a63148098850 | |
| 92 | rnaseq | wdl | rnaseq_wdl_v1 | RNA-seq (WDL) v1 | 1.0.16 | ● Enabled | 8a59edd1-dc06-4c51-b090-35327fa88a94 | |
| 1 | rnaseq | nextflow | rnaseq_v1 | RNA-seq v1 | 1.0.0 | ● Enabled | object://workflows/rnaseq/rnaseq_v1/1.0.0 | |
| 442 | clinical | nextflow | rnaseq_qc | RNASEQ QC | 1.0.0 | ● Enabled | 58153224-de62-4d42-b378-8f8db7fc9be7 | |
| 186 | rnaseq | nextflow | sashimi_plots | Sashimi Plots | 1.0.0 | ● Enabled | 7fdd85c7-e71a-4f9f-8d5c-a48440f3592b | |
| 328 | longread | nextflow | scaffolding | Scaffolding | 1.0.0 | ● Enabled | 6134682a-70fa-41cd-9d08-4871868c28a3 | |
| 598 | singlecell | nextflow | scanpy_pipeline | Scanpy Single-cell Analysis Pipeline | 1.0.0 | ● Enabled | c2ca014e-13c2-4417-80e1-e7d0573d7598 | |
| 522 | singlecell | nextflow | sce_bioconductor | Sce Bioconductor | 1.0.0 | ● Enabled | f1513610-7013-4873-9617-80f99fd1c8f5 | |
| 142 | multimodal | nextflow | scfoundation_finetune | scFoundation Fine-tuning | 1.0.0 | ● Enabled | 22a10804-e918-4186-9fa6-0d11d1f07f4e | |
| 648 | singlecell | nextflow | scgpt_inference | scGPT / Geneformer Cell Type Inference | 1.0.0 | ● Enabled | c226f2dd-9d10-4d78-a679-08fd219593f7 | |
| 419 | funcgen | nextflow | scikit_allel_analysis | Scikit Allel Analysis | 1.0.0 | ● Enabled | e568b0a9-2b06-4e83-8ec3-bbe66e0d02b3 | |
| 493 | singlecell | nextflow | scirpy_analysis | Scirpy Analysis | 1.0.0 | ● Enabled | 6ea2a888-e8c9-4192-aa3c-ff41b514039c | |
| 621 | singlecell | nextflow | scirpy_tcr | scirpy TCR/BCR Single-cell Analysis | 1.0.0 | ● Enabled | c5d7bf2c-c0da-42da-a8b7-373fecb9793b | |
| 117 | singlecell | nextflow | scrna_batch_integration | scRNA Batch Integration | 1.0.0 | ● Enabled | 3df3ae0e-fa14-47cb-a060-5e32297266fc | |
| 540 | singlecell | nextflow | scrna_quality_control | Scrna Quality Control | 1.0.0 | ● Enabled | dd311aca-da01-47ca-89f0-9bd9da040dce | |
| 119 | singlecell | nextflow | sctcr_bcr_repertoire | scTCR/BCR Repertoire | 1.0.0 | ● Enabled | 90f82c7d-c582-42b3-ab16-e75df0a4b048 | |
| 520 | singlecell | nextflow | scvelo_rna_velocity | Scvelo RNA Velocity | 1.0.0 | ● Enabled | 2994b54e-3561-4927-a7c6-a9dc9eea99ad | |
| 609 | singlecell | nextflow | scvelo_velocity | scVelo RNA Velocity Analysis | 1.0.0 | ● Enabled | 34e86d1d-7283-45b6-a99a-34d0415b7b52 | |
| 456 | rnaseq | nextflow | secondary_structure_prediction | Secondary Structure Prediction | 1.0.0 | ● Enabled | 75d8ba66-3a0b-4a64-8984-d540e4416dca | |
| 420 | funcgen | nextflow | selection_statistics | Selection Statistics | 1.0.0 | ● Enabled | 16d4842c-8c83-422c-9e46-fb49e51123c9 | |
| 470 | clinical | nextflow | seq_objects | Seq Objects | 1.0.0 | ● Enabled | ac5563ab-6e1e-4e58-b480-21384853a9c7 | |
| 471 | clinical | nextflow | sequence_properties | Sequence Properties | 1.0.0 | ● Enabled | 036e10a7-483a-4a99-8c48-a9b714d21bf4 | |
| 472 | clinical | nextflow | sequence_slicing | Sequence Slicing | 1.0.0 | ● Enabled | 3b4730f0-0b30-4806-9760-48531bf8cebb | |
| 465 | clinical | nextflow | sequence_statistics | Sequence Statistics | 1.0.0 | ● Enabled | 6eb4046a-af5a-4812-a8bd-0c3737f12478 | |
| 519 | singlecell | nextflow | seurat_scrna | Seurat Scrna | 1.0.0 | ● Enabled | 486bf4d0-39ac-45a6-b660-4fae99b515a0 | |
| 329 | longread | nextflow | short_read_assembly | Short Read Assembly | 1.0.0 | ● Enabled | 694f849a-ad3f-41f6-9b29-b4f684d2ad2c | |
| 404 | multimodal | nextflow | similarity_network | Similarity Network | 1.0.0 | ● Enabled | b0421fb2-3e52-4f08-aaf3-2ad1d38bcbed | |
| 530 | clinical | nextflow | simpleitk_registration | Simpleitk Registration | 1.0.0 | ● Enabled | c81e42c1-0cf0-46c9-85d9-5bb8f9d52c8d | |
| 187 | rnaseq | nextflow | single_cell_splicing | Single Cell Splicing | 1.0.0 | ● Enabled | cc9c058f-ca6b-4c1d-b62a-bb4976e1e6f9 | |
| 64 | singlecell | nextflow | scatac_seq_v1 | Single-Cell ATAC-seq | 1.0.0 | ● Enabled | 47853a25-b6f4-4656-85ed-20f4220f4e62 | |
| 77 | singlecell | nextflow | single_cell_multiome_v1 | Single-Cell Multiome (RNA+ATAC) | 1.0.0 | ● Enabled | 2c0b488d-8ad1-46ec-90ee-fefdfe49f64b | |
| 610 | singlecell | nextflow | scrna_qc_pipeline | Single-cell RNA-seq QC Pipeline | 1.0.0 | ● Enabled | de229e2f-3612-4e71-8bd5-4e3776224376 | |
| 612 | spatial | nextflow | single_to_spatial | Single-cell to Spatial Mapping | 1.0.0 | ● Enabled | 25a36727-a76f-4919-a753-9e835cacf78e | |
| 73 | singlecell | nextflow | single_cell_vdj_v1 | Single-Cell VDJ Immune Repertoire | 1.0.0 | ● Enabled | 057e8de6-0cbd-4eff-82ae-8d82339dc9c8 | |
| 477 | rnaseq | nextflow | smrna_preprocessing | Smrna Preprocessing | 1.0.0 | ● Enabled | 7e484d42-f821-4480-99e8-8fb064c5f615 | |
| 605 | multimodal | nextflow | snakemake_engine | Snakemake Workflow Engine | 1.0.0 | ● Enabled | 4cc46408-cdfc-496d-9e51-aafc0d8dd67a | |
| 521 | singlecell | nextflow | snapatac2_scatac | Snapatac2 Scatac | 1.0.0 | ● Enabled | 5f34dc8e-e223-4296-b613-4c1799fccc97 | |
| 616 | singlecell | nextflow | snapatac2_pipeline | SnapATAC2 Single-cell ATAC-seq | 1.0.0 | ● Enabled | 6a752c96-1254-432f-85c9-d8e9955f458d | |
| 95 | clinical | nextflow | somatic_variant_calling | Somatic Variant Calling | 1.0.0 | ● Enabled | f20b25ac-8417-45be-b2de-b45c2e7637d3 | |
| 642 | somatic_calling | nextflow | somatic_calling | Somatic Variant Calling (GATK Mutect2) | 1.0.0 | ● Enabled | 969e323b-1bff-4149-9ce0-245f5e9dc361 | |
| 118 | singlecell | nextflow | spatial_scrna_integration | Spatial + scRNA Integration | 1.0.0 | ● Enabled | 05503955-1100-424d-9d34-1edc095f6824 | |
| 357 | spatial | nextflow | spatial_analysis | Spatial Analysis | 1.0.0 | ● Enabled | 0e216d2c-97a0-4fa5-84d6-3768f566ea5a | |
| 79 | spatial | nextflow | spatial_multiomics_v1 | Spatial Multi-omics (RNA+Protein) | 1.0.0 | ● Enabled | 2e28ae40-1872-4c27-8891-645c7ba7395c | |
| 76 | spatial | nextflow | spatial_proteomics_v1 | Spatial Proteomics (CODEX/IMC) | 1.0.0 | ● Enabled | db729913-659f-43e1-a9e0-d4f169c99339 | |
| 15 | spatial | wdl | spatial_single_cell_alevin_fry_wdl_v1 | Spatial Single-Cell (WDL) — Salmon + alevin-fry (USA / cr-like) | 1.0.0 | ● Enabled | 59ac9ab6-9154-4926-96a2-ae031f774f19 | |
| 617 | spatial | nextflow | spatial_tx_seurat | Spatial Transcriptomics Analysis | 1.0.0 | ● Enabled | 248d3407-6183-44a8-b9a3-4d212108a731 | |
| 618 | spatial | nextflow | spatial_tx_squidpy | Spatial Transcriptomics with Squidpy | 1.0.0 | ● Enabled | 4a81c8ff-dcd5-4649-8311-35155d85a53d | |
| 432 | proteomics | nextflow | spectral_libraries | Spectral Libraries | 1.0.0 | ● Enabled | e342e60e-9e70-4f3d-8235-3cbd99fe327b | |
| 209 | epigenomics | nextflow | spike_in_normalization | Spike In Normalization | 1.0.0 | ● Enabled | fb38fe01-ba2e-4765-bede-8c651c158515 | |
| 606 | multimodal | nextflow | spikeinterface_ephys_v2 | SpikeInterface Electrophysiology v2 | 1.0.0 | ● Enabled | bf9c2dfe-4d2a-4567-8661-6e4f3a926efb | |
| 536 | multimodal | nextflow | spikeinterface_ephys | Spikeinterface Ephys | 1.0.0 | ● Enabled | 4992c60e-9e1c-4566-a3a7-bf9111cd03ef | |
| 188 | rnaseq | nextflow | splice_variant_prediction | Splice Variant Prediction | 1.0.0 | ● Enabled | f8fb23eb-b0a1-43e0-8277-6a80f0090fd3 | |
| 189 | rnaseq | nextflow | splicing_qc | Splicing QC | 1.0.0 | ● Enabled | 8d8f8949-7f84-4546-94b1-6fa85769f4f9 | |
| 160 | rnaseq | nextflow | splicing_quantification | Splicing Quantification with rMATS | 1.0.0 | ● Enabled | 6e4a470a-95a6-4601-94ab-e916c8ee1ecb | |
| 538 | spatial | nextflow | squidpy_spatial | Squidpy Spatial | 1.0.0 | ● Enabled | 1039e639-17aa-4720-bbbb-fb2243454ea5 | |
| 234 | epigenomics | nextflow | stamp_antibody_free | Stamp Antibody Free | 1.0.0 | ● Enabled | 143c9ca9-bf68-4a81-b76d-979dd1bff68b | |
| 436 | clinical | nextflow | star_alignment | Star Alignment | 1.0.0 | ● Enabled | 9fdd5528-f499-4cd8-ab49-024a22c98e4e | |
| 386 | multimodal | nextflow | statistical_analysis | Statistical Analysis | 1.0.0 | ● Enabled | ce2819ca-d1a6-41c9-91f5-44b824ab4fa1 | |
| 170 | microbiome | nextflow | strain_tracking | Strain Tracking with inStrain | 1.0.0 | ● Enabled | 2d1596ae-4179-4728-8676-3ad999f1ed6c | |
| 506 | clinical | nextflow | structural_variant_calling | Structural Variant Calling | 1.0.0 | ● Enabled | e5df3dd5-d82f-4af0-a4f2-2b39d044f144 | |
| 145 | clinical | nextflow | sv_calling_v2 | Structural Variant Calling v2 | 1.0.0 | ● Enabled | ea85ec35-89a3-4d5d-9893-b72f65e6251e | |
| 42 | clinical | nextflow | sv_nextflow_v1 | Structural Variant Detection (Nextflow) v1 | 1.0.0 | ● Enabled | 0c66e0d8-0fab-4ab5-ab0d-e16200c5ad0f | |
| 374 | longread | nextflow | structural_variants | Structural Variants | 1.0.0 | ● Enabled | ff633b5f-e431-4034-a1c3-7b2c00558071 | |
| 482 | multimodal | nextflow | structure_io | Structure Io | 1.0.0 | ● Enabled | 60419f3d-b867-49f9-8b7e-ca3276f95a9e | |
| 483 | multimodal | nextflow | structure_modification | Structure Modification | 1.0.0 | ● Enabled | 9120457b-493e-4ae1-aafe-43beaae35fa3 | |
| 484 | multimodal | nextflow | structure_navigation | Structure Navigation | 1.0.0 | ● Enabled | 8baf781c-a219-4a3c-b09e-d655fb95a268 | |
| 457 | rnaseq | nextflow | structure_probing | Structure Probing | 1.0.0 | ● Enabled | 4e6ff73f-bd18-4be1-a947-21a82af8a29e | |
| 220 | clinical | nextflow | subgroup_analysis | Subgroup Analysis | 1.0.0 | ● Enabled | 22df3a0e-3fba-4e20-91df-2a09b8a102f5 | |
| 210 | epigenomics | nextflow | super_enhancers | Super Enhancers | 1.0.0 | ● Enabled | 86e7fee6-dbf2-472e-9311-749e329117b8 | |
| 221 | clinical | nextflow | survival_analysis | Survival Analysis | 1.0.0 | ● Enabled | bd456340-f2a4-404d-b565-b3aa57b5ecb9 | |
| 380 | multimodal | nextflow | survival_analysis | Survival Analysis | 1.0.0 | ● Enabled | bc631764-4b61-446d-ae47-a68801a4b6a0 | |
| 636 | clinical | nextflow | susie_finemapping | SuSiE Fine-mapping | 1.0.0 | ● Enabled | cd523022-f940-4b80-9059-2f6615e0286f | |
| 245 | funcgen | nextflow | synteny_analysis | Synteny Analysis | 1.0.0 | ● Enabled | c7ae9d58-5b57-41fa-bd1e-a3009f12ff11 | |
| 182 | funcgen | nextflow | tad_detection | TAD Detection with cooltools | 1.0.0 | ● Enabled | 7ef7bdc6-b8fb-4f71-a9c8-3e46f085edc2 | |
| 478 | rnaseq | nextflow | target_prediction | Target Prediction | 1.0.0 | ● Enabled | 2a494548-cff9-4574-b07a-252c3da6385e | |
| 387 | multimodal | nextflow | targeted_analysis | Targeted Analysis | 1.0.0 | ● Enabled | 4008c54c-5901-425f-a03f-27e4e659b9c6 | |
| 400 | microbiome | nextflow | taxonomy_assignment | Taxonomy Assignment | 1.0.0 | ● Enabled | d4b9df87-6a24-4816-9336-2c0902178313 | |
| 539 | clinical | nextflow | tcga_data_preprocessing | TCGA Data Preprocessing | 1.0.0 | ● Enabled | d51bf061-2b2c-41c4-8292-0166f492c8e5 | |
| 361 | clinical | nextflow | tcr_epitope_binding | TCR Epitope Binding | 1.0.0 | ● Enabled | 844c1429-a012-4a6b-b62a-33e62417adc7 | |
| 620 | singlecell | nextflow | repertoire_viz | TCR/BCR Repertoire Visualization | 1.0.0 | ● Enabled | 87471bcd-880a-4f6a-88bb-934f2ea35cde | |
| 497 | multimodal | nextflow | temporal_clustering | Temporal Clustering | 1.0.0 | ● Enabled | 2f5ded6d-6f26-4b98-a7c4-54ae06d31bad | |
| 498 | multimodal | nextflow | temporal_grn | Temporal GRN | 1.0.0 | ● Enabled | 8b9db8c9-8fc8-4f67-992e-d3c241647efa | |
| 641 | tmb_msi | nextflow | tmb_msi | TMB and MSI Analysis | 1.0.0 | ● Enabled | 7cb74837-5619-47cd-b9ba-36cb8c3fa54f | |
| 499 | multimodal | nextflow | trajectory_modeling | Trajectory Modeling | 1.0.0 | ● Enabled | 5ea78440-9a3c-48f1-ad6f-7b97a5c01bfd | |
| 473 | clinical | nextflow | transcription_translation | Transcription Translation | 1.0.0 | ● Enabled | e018e06a-0014-4e11-8276-ac3526bd5d1c | |
| 198 | funcgen | nextflow | transcriptome_wide_association | Transcriptome Wide Association | 1.0.0 | ● Enabled | c3d72466-3ba3-413e-bcaf-9bd984da24eb | |
| 450 | rnaseq | nextflow | translation_efficiency | Translation Efficiency | 1.0.0 | ● Enabled | d7dee9ab-0f14-4453-ba5a-374a5e1bf2f1 | |
| 126 | funcgen | nextflow | transposable_elements | Transposable Elements | 1.0.0 | ● Enabled | 7dfee20a-9b16-4ec9-b14f-7581c7bb453a | |
| 222 | clinical | nextflow | trial_reporting | Trial Reporting | 1.0.0 | ● Enabled | 93409f0d-c30b-4ae2-90af-5f3cfa473b40 | |
| 367 | clinical | nextflow | tumor_fraction_estimation | Tumor Fraction Estimation | 1.0.0 | ● Enabled | 6e8aae5d-9870-4186-bc3f-bb6ef1015a47 | |
| 101 | clinical | nextflow | tumor_purity_ploidy | Tumor Purity and Ploidy | 1.0.0 | ● Enabled | 95bd66b1-d4b8-4195-b401-c5bbec25a95e | |
| 454 | rnaseq | nextflow | tximport_workflow | Tximport Workflow | 1.0.0 | ● Enabled | c9d8f884-66fa-4667-a866-5c93c4691c79 | |
| 523 | multimodal | nextflow | umap_dimensionality_reduction | Umap Dimensionality Reduction | 1.0.0 | ● Enabled | 2c7394ec-a109-4de8-b636-068e7f3d0e34 | |
| 608 | multimodal | nextflow | umap_dimensionality | UMAP Dimensionality Reduction | 1.0.0 | ● Enabled | 2618d2d6-5e21-46df-bc91-bdb32f69fa9d | |
| 622 | multimodal | nextflow | umap_projection | UMAP Projection and Clustering | 1.0.0 | ● Enabled | 05a59680-0918-449c-a20e-31a24fb8c6d3 | |
| 541 | multimodal | nextflow | umap_sc_embedding | Umap SC Embedding | 1.0.0 | ● Enabled | 6b81b298-6244-4bd3-b0a9-d0e19a8e4dc7 | |
| 443 | clinical | nextflow | umi_processing | UMI Processing | 1.0.0 | ● Enabled | 2863024e-643e-4949-bd76-0b845c1edae3 | |
| 146 | clinical | nextflow | variant_annotation | Variant Annotation with VEP | 1.0.0 | ● Enabled | d0efe7ad-483a-479a-9c99-e3044d16b1cc | |
| 507 | clinical | nextflow | variant_calling | Variant Calling | 1.0.0 | ● Enabled | 2f0bd3de-325b-4177-982e-9fdf9da286df | |
| 45 | clinical | nextflow | variant_ml_scoring_v1 | Variant ML Annotation & Scoring Pipeline | 1.0.0 | ● Enabled | e76ec201-53c2-41ba-b533-f3e7962cc450 | |
| 508 | clinical | nextflow | variant_normalization | Variant Normalization | 1.0.0 | ● Enabled | 4d79a43c-b651-4727-8482-62c238f45110 | |
| 509 | clinical | nextflow | vcf_basics | VCF Basics | 1.0.0 | ● Enabled | ce1afac7-a42b-41f2-a2a4-744a8d79e989 | |
| 510 | clinical | nextflow | vcf_manipulation | VCF Manipulation | 1.0.0 | ● Enabled | 54136949-b2dd-4934-ab74-04a25b934fc5 | |
| 511 | clinical | nextflow | vcf_statistics | VCF Statistics | 1.0.0 | ● Enabled | 8098a2c8-7188-445a-9b88-ec93509f9a71 | |
| 494 | singlecell | nextflow | vdjtools_analysis | Vdjtools Analysis | 1.0.0 | ● Enabled | c4918d8f-532c-4385-a976-1abc06b8c4dd | |
| 100 | clinical | nextflow | viral_integration | Viral Integration | 1.0.0 | ● Enabled | d8ed8cd4-8a6d-4c9c-a163-6553d59c5d13 | |
| 633 | epigenomics | nextflow | wasp_allele_specific | WASP Allele-specific Binding Analysis | 1.0.0 | ● Enabled | 7c0b22b3-1a64-4593-8c64-9c68060721be | |
| 542 | multimodal | nextflow | western_blot_quant | Western Blot Quant | 1.0.0 | ● Enabled | ac19000a-70f4-4dc1-9009-519a808589c1 | |
| 103 | epigenomics | nextflow | wgbs | WGBS Methylation | 1.0.0 | ● Enabled | c6be39d5-d1cd-400b-a8da-7e47378eb8c2 | |
| 36 | clinical | nextflow | omnibioai_wes_nextflow_v1 | Whole Exome Sequencing (Nextflow) | 1.0.0 | ● Enabled | e9ce2fae-50b1-46f0-a922-af8c65ebb2f3 | |
| 246 | funcgen | nextflow | whole_genome_alignment | Whole Genome Alignment | 1.0.0 | ● Enabled | d0a9c866-a382-4409-8259-283016ebcded | |
| 247 | funcgen | nextflow | whole_genome_duplication | Whole Genome Duplication | 1.0.0 | ● Enabled | fed31e80-9ed7-4bab-a589-804f98fe15f7 | |
| 583 | multimodal | nextflow | histolab_wsi | Whole Slide Image Processing | 1.0.0 | ● Enabled | c55a65ed-d7b3-4189-96ac-67de55c83896 | |
| 410 | clinical | nextflow | wikipathways | Wikipathways | 1.0.0 | ● Enabled | f9ae7b40-67a2-49a2-83ae-40dad0c3c451 | |
| 466 | clinical | nextflow | write_sequences | Write Sequences | 1.0.0 | ● Enabled | 712a0951-35ee-4c5d-b216-50a68af8549c | |
| 388 | multimodal | nextflow | xcms_preprocessing | Xcms Preprocessing | 1.0.0 | ● Enabled | 89e1a403-7e9e-4a3f-a91c-2f2d069c1535 | |
| 650 | spatial | nextflow | spatial_xenium | Xenium + Visium HD Joint Spatial Analysis | 1.0.0 | ● Enabled | b6a0fca6-cabb-4655-a582-c84ecbfc940b |