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Threshold Recommendation (Visium)
Approve/edit agent-suggested Visium QC thresholds and freeze them as an auditable artifact for downstream spatial analysis.
Approve QC Thresholds
Spatial workflow output (OmniObject)
-- Select workflow_runner output.json object --
Recommended: select the workflow_runner output.json (object_type=spatial_workflow_output_json) to link provenance.
qc_plots_run_id (optional)
min_umi_per_spot
min_genes_per_spot
max_mito_fraction (0-1)
min_tissue_coverage_fraction (0-1)
reviewer (optional)
notes (optional)
Approved
Save Decision
This plugin freezes thresholds as
qc_thresholds.json
and registers an OmniObject of type
spatial_thresholds
for downstream spatial analysis.