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Spatial Clustering (Visium)
Compute neighbors + Leiden clustering + (optional) UMAP from AnnData (.h5ad).
Run Spatial Clustering
AnnData input (.h5ad)
-- choose AnnData object --
Thresholds (optional; provenance only)
-- none --
method
leiden
louvain (future)
cluster_key
resolution
n_pcs
neighbors_k
random_state
min_dist (UMAP)
compute_umap
Run Clustering
This plugin is DB-free. It reads AnnData via
object_id
and writes results to
work/runs/spatial_clustering/<run_id>/out/
.