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Read Simulator
Generate synthetic FASTQ reads for WGS/WES/RNA. Outputs FASTQ + manifest for benchmarking and demo pipelines.
Plugin: read_simulator
Category: genomics
Run
Configuration
Mode
WGS
WES
RNA-seq
Layout
Single-end
Paired-end
Engine
Auto
wgsim
dwgsim
Auto will pick dwgsim for WGS/WES. For RNA in v1, provide transcript FASTA (pipeline-test mode).
Organism
Human
Mouse
Reference FASTA (from data/reference)
-- select --
Required for WGS/WES.
Transcript FASTA (from data/reference)
-- select --
Required for RNA mode (v1).
GTF (from data/reference)
-- select --
Optional for now; useful in RNA pipelines later.
Read length
Seed
Coverage (WGS/WES)
Num reads (RNA)
Fragment mean (paired)
Fragment sd (paired)
Sample name
Run simulation
Run status
Submit a run to generate a run_id.