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PTM Site Predictor (ESM2 windowed embeddings)
MLP on windowed ESM2 embeddings around candidate residues, predicting PTM type — unlike ptm_analysis, which only aggregates PTMs already identified by upstream mass spec, never reading sequence.
v1.0.0
AI & ML
Model Registry: ptm_site_prediction
Run
Input
Mode
Infer — run predictions with a registered model
Train — train and register a new model version
sequence, position, site_id columns (candidate PTM sites)
Labels / targets (required for Train)
Model reference (Infer mode)
Hyperparameters (JSON, Train mode)
Results
Run Log