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Run Detail

Deep inspection of execution state + artifacts

Status

RunStatus(run_id='baf508986ffc43be', plugin='rnaseq_analysis', state='FAILED', created_at='2026-06-01T00:50:51.431926+00:00', updated_at='2026-06-01T00:50:59.434591+00:00', steps=[RunStepStatus(name='prepare_inputs', status='failed', detail=None, updated_at='2026-06-01T00:50:51.434582+00:00'), RunStepStatus(name='deseq2', status='failed', detail=None, updated_at='2026-06-01T00:50:51.434715+00:00')], detail='Artifact file not found inside object: work/workflow_runner_exec/e4db801e4d574769/out/kallisto/SRR390727/abundance.tsv (looked for /app/work/runs/rnaseq_analysis/baf508986ffc43be/workflow_proxy/work/workflow_runner_exec/e4db801e4d574769/out/kallisto/SRR390727/abundance.tsv).')

Run Config

{'run_id': 'baf508986ffc43be', 'plugin': 'rnaseq_analysis', 'category': 'analysis', 'engine': 'local_docker', 'created_at': '2026-06-01T00:50:51.431926+00:00', 'params': {'fastq_ids': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_2.sub100k.fastq.gz'], 'sample_metadata': [{'sample_id': 'SRR390727', 'condition': 'control'}, {'sample_id': 'SRR390728', 'condition': 'control'}, {'sample_id': 'SRR390729', 'condition': 'treated'}, {'sample_id': 'SRR390730', 'condition': 'treated'}], 'workflow_id': '92', 'category': 'rnaseq', 'wdl_inputs': {'RnaseqMulti.fastq1s': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_1.sub100k.fastq.gz'], 'RnaseqMulti.fastq2s': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_2.sub100k.fastq.gz'], 'RnaseqMulti.sample_ids': ['SRR390727', 'SRR390728', 'SRR390729', 'SRR390730'], 'RnaseqMulti.adapters': '/home/manish/Desktop/machine/data/uploads/rnaseq/adapters.skewer.fa', 'RnaseqMulti.gtf': '/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto/gencode.v19.annotation.gtf', 'RnaseqMulti.idx': '/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto_idx_compat/gencode.v19.pc_transcripts.compat.kallisto_v13.idx', 'RnaseqMulti.kallisto_threads': 8, 'RnaseqMulti.skewer_threads': 8, 'RnaseqMulti.minimum_read_length': 35, 'RnaseqMulti.bootstrap_samples': 0, 'RnaseqMulti.strandedness': '--rf-stranded'}, 'exec': {}}, 'inputs': {'object_id': '82a2b848-cda4-4285-825f-9535b61e82ff', 'metadata_rows': [{'sample_id': 'SRR390727', 'condition': 'control'}, {'sample_id': 'SRR390728', 'condition': 'control'}, {'sample_id': 'SRR390729', 'condition': 'treated'}, {'sample_id': 'SRR390730', 'condition': 'treated'}]}, 'meta': {'cli': True, 'pipeline_run_id': ''}}

Artifacts

No artifacts found