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Run Detail

Deep inspection of execution state + artifacts

Status

RunStatus(run_id='8545720ea78a47fd', plugin='rnaseq_analysis', state='FAILED', created_at='2026-05-31T19:06:03.405797+00:00', updated_at='2026-05-31T19:06:11.409169+00:00', steps=[RunStepStatus(name='prepare_inputs', status='failed', detail=None, updated_at='2026-05-31T19:06:03.409070+00:00'), RunStepStatus(name='deseq2', status='failed', detail=None, updated_at='2026-05-31T19:06:03.409454+00:00')], detail="'dict' object has no attribute 'strip'")

Run Config

{'run_id': '8545720ea78a47fd', 'plugin': 'rnaseq_analysis', 'category': 'analysis', 'engine': 'local_docker', 'created_at': '2026-05-31T19:06:03.405797+00:00', 'params': {'fastq_ids': ['[', '"', '/', 'h', 'o', 'm', 'e', '/', 'm', 'a', 'n', 'i', 's', 'h', '/', 'D', 'e', 's', 'k', 't', 'o', 'p', '/', 'm', 'a', 'c', 'h', 'i', 'n', 'e', '/', 'd', 'a', 't', 'a', '/', 'u', 'p', 'l', 'o', 'a', 'd', 's', '/', 'r', 'n', 'a', 's', 'e', 'q', '/', 'r', 'n', 'a', 's', 'e', 'q', '_', 's', 'u', 'b', '1', '0', '0', 'k', '/', 'S', 'R', 'R', '3', '9', '0', '7', '2', '7', '_', '1', '.', 's', 'u', 'b', '1', '0', '0', 'k', '.', 'f', 'a', 's', 't', 'q', '.', 'g', 'z', '"', ',', ' ', '"', '/', 'h', 'o', 'm', 'e', '/', 'm', 'a', 'n', 'i', 's', 'h', '/', 'D', 'e', 's', 'k', 't', 'o', 'p', '/', 'm', 'a', 'c', 'h', 'i', 'n', 'e', '/', 'd', 'a', 't', 'a', '/', 'u', 'p', 'l', 'o', 'a', 'd', 's', '/', 'r', 'n', 'a', 's', 'e', 'q', '/', 'r', 'n', 'a', 's', 'e', 'q', '_', 's', 'u', 'b', '1', '0', '0', 'k', '/', 'S', 'R', 'R', '3', '9', '0', '7', '2', '7', '_', '2', '.', 's', 'u', 'b', '1', '0', '0', 'k', '.', 'f', 'a', 's', 't', 'q', '.', 'g', 'z', '"', ']'], 'workflow_id': '92', 'wdl_inputs': '{"RnaseqMulti.fastq1s": ["/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_1.sub100k.fastq.gz"], "RnaseqMulti.fastq2s": ["/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_2.sub100k.fastq.gz"], "RnaseqMulti.sample_ids": ["SRR390727"], "RnaseqMulti.adapters": "/home/manish/Desktop/machine/data/uploads/rnaseq/adapters.skewer.fa", "RnaseqMulti.gtf": "/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto/gencode.v19.annotation.gtf", "RnaseqMulti.idx": "/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto_idx_compat/gencode.v19.pc_transcripts.compat.kallisto_v13.idx", "RnaseqMulti.kallisto_threads": 8, "RnaseqMulti.skewer_threads": 8, "RnaseqMulti.minimum_read_length": 35, "RnaseqMulti.bootstrap_samples": 0, "RnaseqMulti.strandedness": "--rf-stranded"}', 'exec': {}}, 'inputs': {'object_id': '50f24f2c-98b3-4894-912d-2d630768e80a', 'metadata_rows': [{'sample_id': {'sample_id': 'out', 'tags': ['archive']}, 'condition': 'control'}, {'sample_id': {'sample_id': 'run', 'tags': ['log', 'metrics']}, 'condition': 'treatment'}, {'sample_id': {'sample_id': 'SRR390727', 'tags': ['rnaseq', 'kallisto']}, 'condition': 'treatment'}]}, 'meta': {'cli': True, 'pipeline_run_id': ''}}

Artifacts

No artifacts found