Run Detail
Deep inspection of execution state + artifacts
Status
RunStatus(run_id='441dc55dbeca403d', plugin='rnaseq_analysis', state='COMPLETED', created_at='2026-06-01T03:26:04.633872+00:00', updated_at='2026-06-01T03:26:12.671761+00:00', steps=[RunStepStatus(name='prepare_inputs', status='ok', detail=None, updated_at='2026-06-01T03:26:05.079412+00:00'), RunStepStatus(name='deseq2', status='ok', detail=None, updated_at='2026-06-01T03:26:12.619862+00:00')], detail='OK')
Run Config
{'run_id': '441dc55dbeca403d', 'plugin': 'rnaseq_analysis', 'category': 'analysis', 'engine': 'local_docker', 'created_at': '2026-06-01T03:26:04.633872+00:00', 'params': {'fastq_ids': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_2.sub100k.fastq.gz'], 'sample_metadata': [{'sample_id': 'SRR390727', 'condition': 'control'}, {'sample_id': 'SRR390728', 'condition': 'control'}, {'sample_id': 'SRR390729', 'condition': 'treated'}, {'sample_id': 'SRR390730', 'condition': 'treated'}], 'workflow_id': '92', 'category': 'rnaseq', 'wdl_inputs': {'RnaseqMulti.fastq1s': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_1.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_1.sub100k.fastq.gz'], 'RnaseqMulti.fastq2s': ['/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390727_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390728_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390729_2.sub100k.fastq.gz', '/home/manish/Desktop/machine/data/uploads/rnaseq/rnaseq_sub100k/SRR390730_2.sub100k.fastq.gz'], 'RnaseqMulti.sample_ids': ['SRR390727', 'SRR390728', 'SRR390729', 'SRR390730'], 'RnaseqMulti.adapters': '/home/manish/Desktop/machine/data/uploads/rnaseq/adapters.skewer.fa', 'RnaseqMulti.gtf': '/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto/gencode.v19.annotation.gtf', 'RnaseqMulti.idx': '/home/manish/Desktop/machine/data/uploads/rnaseq/kallisto_idx_compat/gencode.v19.pc_transcripts.compat.kallisto_v13.idx', 'RnaseqMulti.kallisto_threads': 8, 'RnaseqMulti.skewer_threads': 8, 'RnaseqMulti.minimum_read_length': 35, 'RnaseqMulti.bootstrap_samples': 0, 'RnaseqMulti.strandedness': '--rf-stranded'}, 'exec': {}}, 'inputs': {'object_id': '6b9ed262-3d74-46da-96ca-05b662939d5e', 'metadata_rows': [{'sample_id': 'SRR390727', 'condition': 'control'}, {'sample_id': 'SRR390728', 'condition': 'control'}, {'sample_id': 'SRR390729', 'condition': 'treated'}, {'sample_id': 'SRR390730', 'condition': 'treated'}]}, 'meta': {'cli': True, 'pipeline_run_id': ''}}
Artifacts
{'plugin': 'rnaseq_analysis', 'category': 'analysis', 'run_id': '441dc55dbeca403d', 'engine': 'local_docker', 'steps': [{'name': 'prepare_inputs', 'status': 'ok'}, {'name': 'deseq2', 'status': 'ok'}], 'outputs': [{'path': 'out/outputs/deseq_results.tsv', 'label': 'DESeq2 results', 'type': 'table'}, {'path': 'out/outputs/deseq_results.filtered.tsv', 'label': 'DESeq2 results (filtered)', 'type': 'table'}, {'path': 'out/outputs/summary.json', 'label': 'Run summary', 'type': 'report'}, {'path': 'out/outputs/plots/ma.html', 'label': 'MA plot (interactive)', 'type': 'report'}, {'path': 'out/outputs/plots/volcano.html', 'label': 'Volcano plot (interactive)', 'type': 'report'}, {'path': 'out/outputs/plots/ma.png', 'label': 'MA plot (png)', 'type': 'plot'}, {'path': 'out/outputs/plots/volcano.png', 'label': 'Volcano plot (png)', 'type': 'plot'}], 'created_at': '2026-06-01T03:26:12.620056+00:00'}