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Exome Analysis

Prioritize + report from an annotated VCF (OmniObject registry or upload)
Input: annotated VCF Engine: RunStore
Variant Annotation

Run Exome Analysis

Source: work/object_registry.json
Accepted: .vcf, .vcf.gz
Tip: If you select an object from the registry, upload is optional. If you upload a file, object selection is optional.

What this plugin does (v1)

  • Reads annotated VCF (SnpEff ANN and/or VEP CSQ).
  • Filters by PASS (optional) and max_af.
  • Scores variants (severity + ClinSig + rarity + QUAL).
  • Writes: variants.tsv, genes.tsv, report.html, and RunStore artifacts.